Principles in the Evolution of Metabolic Networks

TL;DR

This paper investigates the evolutionary principles underlying the scale-free and robust organization of metabolic networks across diverse organisms, revealing a universal 'rich-travel-more' mechanism that explains their development.

Contribution

It uncovers a simple, universal evolutionary principle, the 'rich-travel-more' mechanism, that explains the scale-free structure of metabolic networks across all domains of life.

Findings

Metabolic networks are scale-free and robust across organisms.

Highly linked metabolites exhibit more dynamic chemical link changes.

The 'rich-travel-more' mechanism explains network evolution better than 'rich-get-richer'.

Abstract

Understanding design principles of complex cellular organization is one of the major challenges in biology. Recent analysis of the large-scale cellular organization has revealed the scale-free nature and robustness of metabolic and protein networks. However, the underlying evolutional process that creates such a cellular organization is not fully elucidated. To approach this problem, we analyzed the metabolic networks of 126 organisms, whose draft or complete genome sequences have been published. This analysis has revealed that the evolutional process of metabolic networks follows the same and surprisingly simple principles in Archaea, Bacteria and Eukaryotes; where highly linked metabolites change their chemical links more dynamically than less linked metabolites. Here we demonstrate that this rich-travel-more mechanism rather than the previously proposed rich-get-richer mechanism can generate the observed scale-free organization of metabolic networks. These findings illustrate universal principles in evolution of metabolic networks and suggest marked flexibility of metabolic network throughout evolution.