# Immunopeptidomics-based design of mRNA vaccine formulations against Listeria monocytogenes

**Authors:** Rupert L. Mayer, Rein Verbeke, Caroline Asselman, Ilke Aernout, Adillah Gul, Denzel Eggermont, Katie Boucher, Fabien Thery, Teresa M. Maia, Hans Demol, Ralf Gabriels, Lennart Martens, Christophe Bécavin, Stefaan C. De Smedt, Bart Vandekerckhove, Ine Lentacker, Francis Impens

PMC · DOI: 10.1038/s41467-022-33721-y · Nature Communications · 2022-10-14

## TL;DR

The paper presents a new mRNA vaccine approach against Listeria monocytogenes by identifying bacterial antigens presented on infected cells.

## Contribution

The study identifies novel Listeria antigens using immunopeptidomics and demonstrates their potential as mRNA vaccine candidates.

## Key findings

- 68 Listeria immunopeptides from 42 bacterial proteins were identified using immunopeptidomics.
- mRNA vaccines encoding these antigens induced protective CD8+ T-cell responses in mice.
- The findings offer a foundation for developing clinical vaccines against Listeria.

## Abstract

Listeria monocytogenes is a foodborne intracellular bacterial pathogen leading to human listeriosis. Despite a high mortality rate and increasing antibiotic resistance no clinically approved vaccine against Listeria is available. Attenuated Listeria strains offer protection and are tested as antitumor vaccine vectors, but would benefit from a better knowledge on immunodominant vector antigens. To identify novel antigens, we screen for Listeria peptides presented on the surface of infected human cell lines by mass spectrometry-based immunopeptidomics. In between more than 15,000 human self-peptides, we detect 68 Listeria immunopeptides from 42 different bacterial proteins, including several known antigens. Peptides presented on different cell lines are often derived from the same bacterial surface proteins, classifying these antigens as potential vaccine candidates. Encoding these highly presented antigens in lipid nanoparticle mRNA vaccine formulations results in specific CD8+ T-cell responses and induces protection in vaccination challenge experiments in mice. Our results can serve as a starting point for the development of a clinical mRNA vaccine against Listeria and aid to improve attenuated Listeria vaccines and vectors, demonstrating the power of immunopeptidomics for next-generation bacterial vaccine development.

Currently, no approved vaccines for Listeria monocytogenes are available. Here, the authors use immunopeptidomics to map bacterial peptides presented on infected cells and identify antigens that, as mRNA vaccine, provide protection in mice.

## Linked entities

- **Diseases:** listeriosis (MONDO:0005828)
- **Species:** Listeria monocytogenes (taxon 1639), Mus musculus (taxon 10090)

## Full-text entities

- **Genes:** IFNG (interferon gamma) [NCBI Gene 3458] {aka IFG, IFI, IMD69}, EEF1A1 (eukaryotic translation elongation factor 1 alpha 1) [NCBI Gene 1915] {aka CCS-3, CCS3, EE1A1, EEF-1, EEF1A, EF-Tu}, CD8A (CD8 subunit alpha) [NCBI Gene 925] {aka CD8, CD8alpha, IMD116, Leu2, p32}, gap [NCBI Gene 47225870], Fcr (Fc receptor) [NCBI Gene 109615], HLA-A (major histocompatibility complex, class I, A) [NCBI Gene 3105] {aka HLAA}, HLA-DMA (major histocompatibility complex, class II, DM alpha) [NCBI Gene 3108] {aka D6S222E, DMA, HLADM, RING6}, Cd8a (CD8 subunit alpha) [NCBI Gene 12525] {aka Ly-2, Ly-35, Ly-B, Lyt-2}, ActA [NCBI Gene 47223626], Serpinb1-ps1 (serine (or cysteine) peptidase inhibitor, clade B, member 1, pseudogene) [NCBI Gene 282665] {aka EID, ovalbumin}, HLA-C (major histocompatibility complex, class I, C) [NCBI Gene 3107] {aka D6S204, HLA-JY3, HLAC, HLC-C, MHC, PSORS1}, Ifng (interferon gamma) [NCBI Gene 15978] {aka IFN-g, If2f, Ifg}, STAT1 (signal transducer and activator of transcription 1) [NCBI Gene 6772] {aka CANDF7, IMD31A, IMD31B, IMD31C, ISGF-3, STAT91}, TUBA1B (tubulin alpha 1b) [NCBI Gene 10376] {aka K-ALPHA-1}, Tcrb (T cell receptor beta chain) [NCBI Gene 21577] {aka TCRbeta, Tib}
- **Diseases:** lung, prostate, brain, cervical cancer (MESH:D011471), gastroenteritis (MESH:D005759), deaths (MESH:D003643), toxicity (MESH:D064420), encephalitis (MESH:D004660), EGD infection (MESH:D007239), Listeria Infection (MESH:D008088), SARS-CoV-2 (MESH:D000086382), HEAD?labpath (MESH:D005271), sepsis (MESH:D018805), cancer (MESH:D009369), endocarditis (MESH:D004696), weight loss (MESH:D015431), bacterial (MESH:D001424), Lyme disease (MESH:D008193), meningitis (MESH:D008580), Inflammation (MESH:D007249), abortion (MESH:D000026), fetal loss (MESH:D005315), autoimmune (MESH:D001327)
- **Species:** Bacteria Latreille et al. 1825 (Bacteria stick insect, genus) [taxon 629395], Mycobacterium tuberculosis (species) [taxon 1773], Ixodes scapularis (blacklegged tick, species) [taxon 6945], Capra hircus (domestic goat, species) [taxon 9925], Mus musculus (house mouse, species) [taxon 10090], Borreliella burgdorferi (Lyme disease spirochete, species) [taxon 139], Ovis aries (domestic sheep, species) [taxon 9940], Mycoplasma (genus) [taxon 2093], Cavia porcellus (domestic guinea pig, species) [taxon 10141], Chlamydia trachomatis (species) [taxon 813], Homo sapiens (human, species) [taxon 9606], Helicobacter pylori (species) [taxon 210], Listeria monocytogenes EGD (strain) [taxon 1334565], Bos taurus (bovine, species) [taxon 9913], Listeria monocytogenes (species) [taxon 1639]
- **Mutations:** E262K, G1367A, G1376A, G1316A, G1310A, leucine/isoleucine
- **Cell lines:** JY — Homo sapiens (Human), Transformed cell line (CVCL_0108), 15E6 — Homo sapiens (Human), Somatic stem cell (CVCL_RU18), HB-95 — Mus musculus (Mouse), Hybridoma (CVCL_7872), HCT-116 — Homo sapiens (Human), Colon carcinoma, Cancer cell line (CVCL_0291), HeLa — Homo sapiens (Human), Human papillomavirus-related endocervical adenocarcinoma, Cancer cell line (CVCL_0030), 1E8 — Mus musculus (Mouse), Hybridoma (CVCL_C2D2), C57BL/6J — Mus musculus (Mouse), Transformed cell line (CVCL_C0MW), LMON_2272 — Homo sapiens (Human), Finite cell line (CVCL_JE35), LMON_0149 — Homo sapiens (Human), Transformed cell line (CVCL_K418)

## Full text

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## Figures

5 figures with captions in the complete paper: https://tomesphere.com/paper/PMC9562072/full.md

## References

137 references — full list in the complete paper: https://tomesphere.com/paper/PMC9562072/full.md

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Source: https://tomesphere.com/paper/PMC9562072