# Viral-mediated activation and inhibition of programmed cell death

**Authors:** Shayla Grace Verburg, Rebecca Margaret Lelievre, Michael James Westerveld, Jordon Marcus Inkol, Yi Lin Sun, Samuel Tekeste Workenhe

PMC · DOI: 10.1371/journal.ppat.1010718 · PLoS Pathogens · 2022-08-11

## TL;DR

This paper reviews how viruses manipulate programmed cell death to influence their survival and spread within host cells.

## Contribution

The paper provides a comprehensive review of viral strategies to activate or inhibit various forms of programmed cell death.

## Key findings

- Viruses modulate multiple types of programmed cell death, including apoptosis, necroptosis, and pyroptosis.
- The mechanisms by which viruses manipulate programmed cell death are not fully understood for all modalities.
- Modulation of programmed cell death impacts viral pathogenesis and antiviral immunity.

## Abstract

Viruses are ubiquitous intracellular genetic parasites that heavily rely on the infected cell to complete their replication life cycle. This dependency on the host machinery forces viruses to modulate a variety of cellular processes including cell survival and cell death. Viruses are known to activate and block almost all types of programmed cell death (PCD) known so far. Modulating PCD in infected hosts has a variety of direct and indirect effects on viral pathogenesis and antiviral immunity. The mechanisms leading to apoptosis following virus infection is widely studied, but several modalities of PCD, including necroptosis, pyroptosis, ferroptosis, and paraptosis, are relatively understudied. In this review, we cover the mechanisms by which viruses activate and inhibit PCDs and suggest perspectives on how these affect viral pathogenesis and immunity.

## Full-text entities

- **Genes:** Nlrp1a (NLR family, pyrin domain containing 1A) [NCBI Gene 195046] {aka CARD7, DEFCAP, Gm14, Gm15, NAC, Nalp1}, STAT1 (signal transducer and activator of transcription 1) [NCBI Gene 6772] {aka CANDF7, IMD31A, IMD31B, IMD31C, ISGF-3, STAT91}, TLR7 (toll like receptor 7) [NCBI Gene 51284] {aka IMD74, SLEB17, TLR7-like}, Cgas (cyclic GMP-AMP synthase) [NCBI Gene 214763] {aka E330016A19Rik, Mb21d1}, TAT (tyrosine aminotransferase) [NCBI Gene 6898], Ripk3 (receptor-interacting serine-threonine kinase 3) [NCBI Gene 56532] {aka 2610528K09Rik, Rip3}, SPI1 (Spi-1 proto-oncogene) [NCBI Gene 6688] {aka AGM10, OF, PU.1, SFPI1, SPI-1, SPI-A}, IRF3 (interferon regulatory factor 3) [NCBI Gene 3661] {aka IIAE7}, Ddit3 (DNA-damage inducible transcript 3) [NCBI Gene 13198] {aka AltDDIT3, CHOP-10, CHOP10, chop, gadd153}, AKR1A1 (aldo-keto reductase family 1 member A1) [NCBI Gene 10327] {aka ALDR1, ALR, ARM, DD3, HEL-S-6}, TYK2 (tyrosine kinase 2) [NCBI Gene 7297] {aka IMD35, JTK1}, Nlrp9b (NLR family, pyrin domain containing 9B) [NCBI Gene 243874] {aka Nalp-delta, Nalp9b, Nlrp9}, PIK3R1 (phosphoinositide-3-kinase regulatory subunit 1) [NCBI Gene 5295] {aka AGM7, GRB1, IMD36, p85, p85-ALPHA, p85alpha}, STAT3 (signal transducer and activator of transcription 3) [NCBI Gene 6774] {aka ADMIO, ADMIO1, APRF, HIES}, SERPINB6 (serpin family B member 6) [NCBI Gene 5269] {aka CAP, DFNB91, MSTP057, PI-6, PI6, PTI}, ERN1 (endoplasmic reticulum to nucleus signaling 1) [NCBI Gene 2081] {aka IRE1, IRE1P, IRE1a, hIRE1p}, IRF9 (interferon regulatory factor 9) [NCBI Gene 10379] {aka IRF-9, ISGF3, ISGF3G, p48}, TLR3 (toll like receptor 3) [NCBI Gene 7098] {aka CD283, IIAE2, IMD83}, IVNS1ABP (influenza virus NS1A binding protein) [NCBI Gene 10625] {aka ARA3, FLARA3, HSPC068, IMD70, KLHL39, ND1}, EIF2AK3 (eukaryotic translation initiation factor 2 alpha kinase 3) [NCBI Gene 9451] {aka PEK, PERK, WRS}, RHOF (ras homolog family member F, filopodia associated) [NCBI Gene 54509] {aka ARHF, RIF}, EIF2AK2 (eukaryotic translation initiation factor 2 alpha kinase 2) [NCBI Gene 5610] {aka PKR, PPP1R83, PRKR}, DNMT1 (DNA methyltransferase 1) [NCBI Gene 1786] {aka ADCADN, AIM, CXXC9, DNMT, HSN1E, MCMT}, PRKDC (protein kinase, DNA-activated, catalytic subunit) [NCBI Gene 5591] {aka DNA-PKC, DNA-PKcs, DNAPK, DNAPKc, DNPK1, HYRC}, A56R (temporal expression: early/late) [NCBI Gene 3707652], HMGB1 (high mobility group box 1) [NCBI Gene 3146] {aka HMG-1, HMG1, HMG3, SBP-1}, DHX9 (DExH-box helicase 9) [NCBI Gene 1660] {aka DDX9, LKP, MRD75, NDH2, NDHII, RHA}, F1L (temporal expression: early) [NCBI Gene 3707497], TNF (tumor necrosis factor) [NCBI Gene 7124] {aka DIF, IMD127, TNF-alpha, TNFA, TNFSF2, TNLG1F}, GPX4 (glutathione peroxidase 4) [NCBI Gene 2879] {aka GPx-4, GSHPx-4, MCSP, PHGPx, SMDS, snGPx}, CASP8 (caspase 8) [NCBI Gene 841] {aka ALPS2B, CAP4, Casp-8, FLICE, MACH, MCH5}, CYCS (cytochrome c, somatic) [NCBI Gene 54205] {aka CYC, HCS, THC4}, AIM2 (absent in melanoma 2) [NCBI Gene 9447] {aka PYHIN4}, CFLAR (CASP8 and FADD like apoptosis regulator) [NCBI Gene 8837] {aka CASH, CASP8AP1, CLARP, Casper, FLAME, FLAME-1}, CASP5 (caspase 5) [NCBI Gene 838] {aka ICE(rel)III, ICEREL-III, ICH-3}, RELA (RELA proto-oncogene, NF-kB subunit) [NCBI Gene 5970] {aka AIF3BL3, CMCU, NFKB3, p65}, BCL2L11 (BCL2 like 11) [NCBI Gene 10018] {aka BAM, BIM, BOD}, FAS (Fas cell surface death receptor) [NCBI Gene 355] {aka ALPS1A, APO-1, APT1, CD95, FAS1, FASTM}, FADD (Fas associated via death domain) [NCBI Gene 8772] {aka GIG3, IMD90, MORT1}, CGAS (cyclic GMP-AMP synthase) [NCBI Gene 115004] {aka C6orf150, D4, MB21D1, h-cGAS}, BAX (BCL2 associated X, apoptosis regulator) [NCBI Gene 581] {aka BCL2L4}, CRADD (CARD and death domain containing adaptor protein) [NCBI Gene 8738] {aka MRT34, RAIDD}, SKP1 (S-phase kinase associated protein 1) [NCBI Gene 6500] {aka EMC19, OCP-II, OCP2, SKP1A, TCEB1L, p19A}, SNORA73A (small nucleolar RNA, H/ACA box 73A) [NCBI Gene 6080] {aka E1, E1-7, E1b, RNE1, RNU17A, U17A}, IL1B (interleukin 1 beta) [NCBI Gene 3553] {aka IL-1, IL1-BETA, IL1F2, IL1beta}, TLR8 (toll like receptor 8) [NCBI Gene 51311] {aka CD288, IMD98, TLR-8, hTLR8}, XIAP (X-linked inhibitor of apoptosis) [NCBI Gene 331] {aka API3, BIRC4, IAP-3, ILP1, MIHA, XLP2}, STING1 (stimulator of interferon response cGAMP interactor 1) [NCBI Gene 340061] {aka ERIS, MITA, MPYS, NET23, SAVI, STING}, PYCARD (PYD and CARD domain containing) [NCBI Gene 29108] {aka ASC, CARD5, TMS, TMS-1, TMS1}, MYD88 (MYD88 innate immune signal transduction adaptor) [NCBI Gene 4615] {aka IMD68, MYD88D, WM1}, IFITM3 (interferon induced transmembrane protein 3) [NCBI Gene 10410] {aka 1-8U, DSPA2b, IP15}, GSDMD (gasdermin D) [NCBI Gene 79792] {aka DF5L, DFNA5L, FKSG10, GSDMDC1}, HSP90AA1 (heat shock protein 90 alpha family class A member 1) [NCBI Gene 3320] {aka EL52, HEL-S-65p, HSP86, HSP89A, HSP90A, HSP90N}, TBK1 (TANK binding kinase 1) [NCBI Gene 29110] {aka AIARV, FTDALS4, IIAE8, NAK, T2K}, TRADD (TNFRSF1A associated via death domain) [NCBI Gene 8717] {aka Hs.89862}, IKBKE (inhibitor of nuclear factor kappa B kinase subunit epsilon) [NCBI Gene 9641] {aka IKK-E, IKK-i, IKKE, IKKI}, SERP2 (stress associated endoplasmic reticulum protein family member 2) [NCBI Gene 387923] {aka C13orf21, bA269C23.1}, EIF2A (eukaryotic translation initiation factor 2A) [NCBI Gene 83939] {aka CDA02, EIF-2A, MST089, MSTP004, MSTP089}, BCL2 (BCL2 apoptosis regulator) [NCBI Gene 596] {aka Bcl-2, PPP1R50}, MCL1 (MCL1 apoptosis regulator, BCL2 family member) [NCBI Gene 4170] {aka BCL2L3, EAT, MCL1-ES, MCL1L, MCL1S, Mcl-1}
- **Diseases:** avian reovirus infection (MESH:D012088), autoimmune disorders (MESH:D001327), influenza A infection (MESH:D007251), infectious disease (MESH:D003141), EBV (MESH:D020031), RIPA (MESH:C566798), inflammatory (MESH:D007249), of apoptosis (MESH:D065703), mitochondrial pore formation (MESH:D058426), immunological and developmental disorders (MESH:D007154), DNA virus infection (MESH:D004266), viral infection (MESH:D014777), cancer (MESH:D009369), amyloid plague (MESH:D010930), necrosis (MESH:D009336), neurodegeneration (MESH:D019636), Infection (MESH:D007239), hepatitis B (MESH:D006509), human immunodeficiency virus (HIV)-infected (MESH:D015658), proinflammatory cytokines (MESH:D000080424), Pseudorabies virus infection (MESH:D011557), PCD (MESH:D003643)
- **Chemicals:** GSH (MESH:D005978), GTP (MESH:D006160), sugar-phosphate (MESH:D013403), lipid peroxides (MESH:D008054), zalcitabine (MESH:D016047), cystine (MESH:D003553), iron (MESH:D007501), phosphatidylinositol (MESH:D010716), Poly I:C (MESH:D011070), Lipid (MESH:D008055), ROS (MESH:D017382), erastin (MESH:C477224), cysteine (MESH:D003545), cGAMP (MESH:C584311), BH3 (MESH:C006008), polyunsaturated fatty acids (MESH:D005231), 2'3' cGAMP (-), ATP (MESH:D000255)
- **Species:** Human papillomavirus (species) [taxon 10566], Murid gammaherpesvirus 4 (Murine herpesvirus 68, no rank) [taxon 33708], Measles morbillivirus (no rank) [taxon 11234], Vesicular stomatitis virus (species) [taxon 11276], Japanese encephalitis virus (no rank) [taxon 11072], Helicoverpa armigera (American bollworm, species) [taxon 29058], Hyphantria cunea (fall webworm moth, species) [taxon 39466], Viruses (acellular root) [taxon 10239], NDV [taxon 11176], Sendai virus [taxon 11191], Hepatitis C virus [taxon 11103], Cowpox virus (no rank) [taxon 10243], Enterovirus A71 (no rank) [taxon 39054], Human T-cell leukemia virus type I (no rank) [taxon 11908], human gammaherpesvirus 4 (Epstein Barr virus, no rank) [taxon 10376], Ectromelia virus (no rank) [taxon 12643], Dengue virus (no rank) [taxon 12637], Senecavirus A (no rank) [taxon 390157], Foot-and-mouth disease virus (no rank) [taxon 12110], Porcine epidemic diarrhea virus (no rank) [taxon 28295], Anticarsia gemmatalis multiple nucleopolyhedrovirus (no rank) [taxon 268591], Human immunodeficiency virus 1 (no rank) [taxon 11676], Monkeypox virus (no rank) [taxon 10244], West Nile virus (no rank) [taxon 11082], Zika virus (no rank) [taxon 64320], Severe acute respiratory syndrome coronavirus 2 (no rank) [taxon 2697049], Variola virus (smallpox virus, no rank) [taxon 10255], Homo sapiens (human, species) [taxon 9606], Cytomegalovirus (genus) [taxon 10358], Myxoma virus (no rank) [taxon 10273], Betaentomopoxvirus amoorei (species) [taxon 28321], Human alphaherpesvirus 1 (Herpes simplex virus type 1, no rank) [taxon 10298], Nipah virus [taxon 121791], Singapore grouper iridovirus (no rank) [taxon 262968], Camelpox virus (no rank) [taxon 28873], African swine fever virus (no rank) [taxon 10497], Cydia pomonella granulovirus (no rank) [taxon 28289], Rabbit fibroma virus (no rank) [taxon 10271], Hepatitis B virus (no rank) [taxon 10407], Pieris rapae (cabbage white, species) [taxon 64459], Human papillomavirus 16 (serotype) [taxon 333760], Orthopoxvirus vaccinia (species) [taxon 10245], Human alphaherpesvirus 2 (no rank) [taxon 10310], Mus musculus (house mouse, species) [taxon 10090], Reovirus sp. (species) [taxon 10891], Orgyia pseudotsugata multiple nucleopolyhedrovirus (no rank) [taxon 262177], Autographa californica nucleopolyhedrovirus (no rank) [taxon 46015], Murid betaherpesvirus 1 (Murine cytomegalovirus, no rank) [taxon 10366], Human alphaherpesvirus 3 (Varicella-zoster virus, no rank) [taxon 10335], Murid herpesvirus 68 (no rank) [taxon 1440122], Autographa californica multiple nucleopolyhedrovirus (no rank) [taxon 307456], Meleagrid alphaherpesvirus 1 (herpesvirus of turkeys, no rank) [taxon 37108], Human betaherpesvirus 5 (no rank) [taxon 10359], Phthorimaea operculella (potato tuberworm, species) [taxon 192464], Influenza A virus (no rank) [taxon 11320], Transmissible gastroenteritis virus (no rank) [taxon 11149], Adenoviridae (family) [taxon 10508]
- **Mutations:** P5273R, N153S, M13L, serine/threonine, M11L, S273R

## Full text

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## Figures

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## References

295 references — full list in the complete paper: https://tomesphere.com/paper/PMC9371342/full.md

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Source: https://tomesphere.com/paper/PMC9371342