# Distinct and additive effects of calorie restriction and rapamycin in aging skeletal muscle

**Authors:** Daniel J. Ham, Anastasiya Börsch, Kathrin Chojnowska, Shuo Lin, Aurel B. Leuchtmann, Alexander S. Ham, Marco Thürkauf, Julien Delezie, Regula Furrer, Dominik Burri, Michael Sinnreich, Christoph Handschin, Lionel A. Tintignac, Mihaela Zavolan, Nitish Mittal, Markus A. Rüegg

PMC · DOI: 10.1038/s41467-022-29714-6 · Nature Communications · 2022-04-19

## TL;DR

Calorie restriction and rapamycin both slow muscle aging in mice, but through different mechanisms and with combined benefits.

## Contribution

The study reveals distinct and additive effects of calorie restriction and rapamycin on aging skeletal muscle.

## Key findings

- CR and rapamycin have distinct gene expression profiles in aging mouse muscle.
- Rapamycin provides additive benefits to CR in naturally aging mouse muscles.
- CR improves muscle integrity even in mice with sustained mTORC1 activity.

## Abstract

Preserving skeletal muscle function is essential to maintain life quality at high age. Calorie restriction (CR) potently extends health and lifespan, but is largely unachievable in humans, making “CR mimetics” of great interest. CR targets nutrient-sensing pathways centering on mTORC1. The mTORC1 inhibitor, rapamycin, is considered a potential CR mimetic and is proven to counteract age-related muscle loss. Therefore, we tested whether rapamycin acts via similar mechanisms as CR to slow muscle aging. Here we show that long-term CR and rapamycin unexpectedly display distinct gene expression profiles in geriatric mouse skeletal muscle, despite both benefiting aging muscles. Furthermore, CR improves muscle integrity in mice with nutrient-insensitive, sustained muscle mTORC1 activity and rapamycin provides additive benefits to CR in naturally aging mouse muscles. We conclude that rapamycin and CR exert distinct, compounding effects in aging skeletal muscle, thus opening the possibility of parallel interventions to counteract muscle aging.

The anti-aging intervention calorie restriction (CR) is thought to act via the nutrient-sensing multiprotein complex mTORC1. Here the authors show that the mTORC1-inhibitor rapamycin and CR use largely distinct mechanisms to slow mouse muscle aging.

## Linked entities

- **Proteins:** Crtc (CREB-regulated transcription coactivator)
- **Chemicals:** rapamycin (PubChem CID 5284616)
- **Species:** Mus musculus (taxon 10090)

## Full-text entities

- **Genes:** Il10 (interleukin 10) [NCBI Gene 16153] {aka CSIF, If2a, Il-10}, Ifng (interferon gamma) [NCBI Gene 15978] {aka IFN-g, If2f, Ifg}, Trib3 (tribbles pseudokinase 3) [NCBI Gene 228775] {aka Ifld2, Nipk, SINK, SKIP3, TRB-3, Trb3}, Pphln1 (periphilin 1) [NCBI Gene 223828] {aka CR, HSPC206, HSPC232}, Map1lc3b (microtubule-associated protein 1 light chain 3 beta) [NCBI Gene 67443] {aka 1010001C15Rik, Atg8, LC3b, MAP1A/MAP1B, Map1lc3}, Gsta1 (glutathione S-transferase, alpha 1 (Ya)) [NCBI Gene 14857] {aka Gst2-1}, Calca (calcitonin/calcitonin-related polypeptide, alpha) [NCBI Gene 12310] {aka CA, CGRP-1, CGRP1, Calc, Calc1, Cgrp}, Tnf (tumor necrosis factor) [NCBI Gene 21926] {aka DIF, TNF-a, TNF-alpha, TNFSF2, TNFalpha, Tnfa}, Akt1 (Akt serine/threonine kinase 1) [NCBI Gene 11651] {aka Akt, LTR-akt, PKB, PKB/Akt, PKBalpha, Rac}, Fgf21 (fibroblast growth factor 21) [NCBI Gene 56636] {aka Fgf8c}, Bnip3 (BCL2/adenovirus E1B interacting protein 3) [NCBI Gene 12176] {aka Nip3}, Hspa5 (heat shock protein family A (Hsp70) member 5) [NCBI Gene 14828] {aka Bip, D2Wsu141e, D2Wsu17e, Grp78, Hsce70, SEZ-7}, Becn1 (beclin 1, autophagy related) [NCBI Gene 56208] {aka Atg6}, Irs1 (insulin receptor substrate 1) [NCBI Gene 16367] {aka G972R, IRS-1}, Ulk1 (unc-51 like kinase 1) [NCBI Gene 22241] {aka Unc51.1, mKIAA0722}, Cbx8 (chromobox 8) [NCBI Gene 30951] {aka Pc3}, Nfe2l2 (nuclear factor, erythroid derived 2, like 2) [NCBI Gene 18024] {aka Nrf2}, Eif4ebp1 (eukaryotic translation initiation factor 4E binding protein 1) [NCBI Gene 13685] {aka 4e-bp1, PHAS-I}, Mtor (mechanistic target of rapamycin kinase) [NCBI Gene 56717] {aka 2610315D21Rik, FRAP, FRAP2, Frap1, RAFT1, RAPT1}, Tsc22d1 (TSC22 domain family, member 1) [NCBI Gene 21807] {aka Egr5, Gm19597, TSC-22, Tgfb1i4, Tsc, Tsc22}, Gabarapl2 (GABA type A receptor associated protein like 2) [NCBI Gene 93739] {aka 0610012F20Rik, 2900019O08Rik, GATE-16, Gef2}, Bdnf (brain derived neurotrophic factor) [NCBI Gene 12064], Ctsl (cathepsin L) [NCBI Gene 13039] {aka 1190035F06Rik, CatL, Ctsl1, MEP, fs, nkt}, Keap1 (kelch-like ECH-associated protein 1) [NCBI Gene 50868] {aka INRF2, mKIAA0132}, NUP62 (nucleoporin 62) [NCBI Gene 23636] {aka IBSN, SNDI, p62}, Gabarapl1 (GABA type A receptor associated protein like 1) [NCBI Gene 57436] {aka 3110025G09Rik, 9130422N19Rik, Apg8l, Atg8l, GECI, MNCb-0091}, Il6 (interleukin 6) [NCBI Gene 16193] {aka Il-6}, Il1b (interleukin 1 beta) [NCBI Gene 16176] {aka IL-1beta, Il-1b}, Atg7 (autophagy related 7) [NCBI Gene 74244] {aka 1810013K23Rik, Agp7, Apg7l, Atg7l, Gm21553}, Xbp1 (X-box binding protein 1) [NCBI Gene 22433] {aka D11Ertd39e, TREB-5, TREB5, XBP-1}, Map1lc3a (microtubule-associated protein 1 light chain 3 alpha) [NCBI Gene 66734] {aka 1010001H21Rik, 4922501H04Rik, LC3, LC3a}, Tsc1 (TSC complex subunit 1) [NCBI Gene 64930], Cd24a (CD24a antigen) [NCBI Gene 12484] {aka Cd24, HSA, Ly-52, nectadrin}, Akt1s1 (AKT1 substrate 1) [NCBI Gene 67605] {aka 1110012J22Rik, Lobe, Lobel, PRAS40}, Rev3l (REV3 like, DNA directed polymerase zeta catalytic subunit) [NCBI Gene 19714] {aka Rev, Rev3, Sez4}, Actb (actin, beta) [NCBI Gene 11461] {aka Actx, E430023M04Rik, beta-actin}, Rps6kb1 (ribosomal protein S6 kinase B1) [NCBI Gene 72508] {aka 2610318I15Rik, P70S6K1, S6K, S6K-beta-1, S6K1, p70 S6K-alpha}, Sqstm1 (sequestosome 1) [NCBI Gene 18412] {aka A170, OSF-6, Osi, STAP, STONE14, p62}
- **Diseases:** sarcopenia (MESH:D055948), muscle atrophy (MESH:D009133), malnutrition (MESH:D044342), sarcoatlas.scicore.unibas.ch (MESH:C535731), inflammatory (MESH:D007249), body mass loss (MESH:C536030), EDL (MESH:D009127), muscle (MESH:D019042), weakness (MESH:D018908), muscle hypertrophy (MESH:C536106), testicular degeneration (MESH:D013733), loss of muscle function (MESH:D009135), Calorie (MESH:D011502), Muscle fatigue (MESH:D005221), CR (MESH:D002313), obese (MESH:D009765), weight gain (MESH:D015430), glucose tolerance (MESH:D018149), muscle degeneration (MESH:D009410), atrophy (MESH:D001284), TSC-AL (MESH:C565346)
- **Chemicals:** AL (MESH:D000535), isopentane (MESH:C067038), DAPI (MESH:C007293), Glycerol (MESH:D005990), minerals (MESH:D008903), Eudragit (MESH:C038300), NaHCO3 (MESH:D017693), Alexa568 (MESH:C000607448), RM (MESH:D020123), Tween20 (MESH:D011136), Fab (MESH:C041112), Glucose (MESH:D005947), poly(T) (MESH:D011071), CaCl2 (MESH:D002122), Laemmli buffer (MESH:C088816), SDS (MESH:D012967), Bis-Tris (MESH:C026272), carbohydrates (MESH:D002241), TBS (MESH:D013725), Glycine (MESH:D005998), Bromphenolblue (MESH:D001978), Alexa647 (MESH:C569686), lipid (MESH:D008055), MgSO4 (MESH:D008278), poly(A) (MESH:D011061), HCl (MESH:D006851), CO2 (MESH:D002245), Blood glucose (MESH:D001786), KCl (MESH:D011189), Triton-X. (MESH:D017830), O2 (MESH:D010100), colchicine (MESH:D003078), 30mCR (-), nitrogen (MESH:D009584), NaCl (MESH:D012965), PBS (MESH:D007854)
- **Species:** Rattus norvegicus (brown rat, species) [taxon 10116], Saccharomyces cerevisiae (baker's yeast, species) [taxon 4932], Homo sapiens (human, species) [taxon 9606], Mus musculus (house mouse, species) [taxon 10090], Drosophila melanogaster (fruit fly, species) [taxon 7227], Diptera (flies, order) [taxon 7147]
- **Mutations:** D10012M
- **Cell lines:** 58M1-9GH8 — Mesocricetus auratus (Golden hamster), Finite cell line (CVCL_A9HU), AIN-93 — Homo sapiens (Human), Nephropathic cystinosis, Finite cell line (CVCL_CW96), C57BL/6 — Mus musculus (Mouse), Transformed cell line (CVCL_C0MU), PC310 — Homo sapiens (Human), Prostate carcinoma, Cancer cell line (CVCL_4878)

## Full text

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## Figures

8 figures with captions in the complete paper: https://tomesphere.com/paper/PMC9018781/full.md

## References

77 references — full list in the complete paper: https://tomesphere.com/paper/PMC9018781/full.md

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Source: https://tomesphere.com/paper/PMC9018781