# S100A9-CXCL12 activation in BRCA1-mutant breast cancer promotes an immunosuppressive microenvironment associated with resistance to immunotherapy

**Authors:** Jianjie Li, Xiaodong Shu, Jun Xu, Sek Man Su, Un In Chan, Lihua Mo, Jianlin Liu, Xin Zhang, Ragini Adhav, Qiang Chen, Yuqing Wang, Tingting An, Xu Zhang, Xueying Lyu, Xiaoling Li, Josh Haipeng Lei, Kai Miao, Heng Sun, Fuqiang Xing, Aiping Zhang, Chuxia Deng, Xiaoling Xu

PMC · DOI: 10.1038/s41467-022-29151-5 · 2022-03-18

## TL;DR

This study finds that BRCA1 mutations in breast cancer lead to an immunosuppressive environment that resists immunotherapy, but this resistance can be overcome by targeting S100A9 and CXCL12.

## Contribution

The study identifies S100A9-CXCL12 signaling as a novel driver of immunosuppression in BRCA1-mutant breast cancer and proposes a combinatory treatment strategy.

## Key findings

- BRCA1 deficiency activates S100A9-CXCL12 signaling, promoting tumor progression and immunosuppression.
- This signaling leads to accumulation of myeloid-derived suppressor cells, causing resistance to immunotherapy.
- Combining S100A9-CXCL12 inhibitors with αPD-1 antibody effectively suppresses these oncogenic effects.

## Abstract

Immune checkpoint blockade (ICB) is a powerful approach for cancer therapy although good responses are only observed in a fraction of cancer patients. Breast cancers caused by deficiency of breast cancer-associated gene 1 (BRCA1) do not have an improved response to the treatment. To investigate this, here we analyze BRCA1 mutant mammary tissues and tumors derived from both BRCA1 mutant mouse models and human xenograft models to identify intrinsic determinants governing tumor progression and ICB responses. We show that BRCA1 deficiency activates S100A9-CXCL12 signaling for cancer progression and triggers the expansion and accumulation of myeloid-derived suppressor cells (MDSCs), creating a tumor-permissive microenvironment and rendering cancers insensitive to ICB. These oncogenic actions can be effectively suppressed by the combinatory treatment of inhibitors for S100A9-CXCL12 signaling with αPD-1 antibody. This study provides a selective strategy for effective immunotherapy in patients with elevated S100A9 and/or CXCL12 protein levels.

Defects in BRCA1, a gene involved in homologous recombination DNA repair, are common in triple negative breast cancer. Here the authors show that Brca1 deficiency in preclinical breast cancer models is associated with the accumulation of myeloid derived suppressive cells and resistance to immune checkpoint blockade, that could be overcome by targeting S100A9 and CXCL12.

## Linked entities

- **Genes:** BRCA1 (BRCA1 DNA repair associated) [NCBI Gene 672], S100A9 (S100 calcium binding protein A9) [NCBI Gene 6280], CXCL12 (C-X-C motif chemokine ligand 12) [NCBI Gene 6387]
- **Proteins:** S100A9 (S100 calcium binding protein A9), CXCL12 (C-X-C motif chemokine ligand 12), Apd-1 (apidermin 1)
- **Diseases:** breast cancer (MONDO:0004989), triple negative breast cancer (MONDO:0005494)
- **Species:** Mus musculus (taxon 10090)

## Full-text entities

- **Genes:** Krt18 (keratin 18) [NCBI Gene 16668] {aka CK18, K18, Krt1-18}, S100A8 (S100 calcium binding protein A8) [NCBI Gene 6279] {aka 60B8AG, CAGA, CFAG, CGLA, CP-10, L1Ag}, Bcl2l1 (BCL2-like 1) [NCBI Gene 12048] {aka Bcl(X)L, Bcl-XL, Bcl2l, BclX, bcl-x, bcl2-L-1}, PDCD1 (programmed cell death 1) [NCBI Gene 5133] {aka ADMIO4, AIMTBS, CD279, PD-1, PD1, SLEB2}, Colgalt1 (collagen beta(1-O)galactosyltransferase 1) [NCBI Gene 234407] {aka 2810024B22Rik, Glt25d1}, Itgam (integrin subunit alpha M) [NCBI Gene 25021] {aka Cd11b}, ITGAM (integrin subunit alpha M) [NCBI Gene 3684] {aka CD11B, CR3A, HNA-4, MAC-1, MAC1A, MO1A}, TP53 (tumor protein p53) [NCBI Gene 7157] {aka BCC7, BMFS5, LFS1, P53, TRP53}, CXCL12 (C-X-C motif chemokine ligand 12) [NCBI Gene 6387] {aka IRH, PBSF, SCYB12, SDF1, TLSF, TPAR1}, Ly6g (lymphocyte antigen 6 family member G) [NCBI Gene 546644] {aka Gr-1, Gr1, Ly-6G}, Ptprc (protein tyrosine phosphatase, receptor type, C) [NCBI Gene 24699] {aka CD45, L-CA, Lca, RT7, T200}, Itgam (integrin alpha M) [NCBI Gene 16409] {aka CD11b/CD18, CR3, CR3A, Cd11b, F730045J24Rik, Ly-40}, AGER (advanced glycosylation end-product specific receptor) [NCBI Gene 177] {aka RAGE, SCARJ1, sRAGE}, Pdcd1 (programmed cell death 1) [NCBI Gene 301626], Cxcr4 (C-X-C motif chemokine receptor 4) [NCBI Gene 12767] {aka CD184, CXC-R4, CXCR-4, Cmkar4, LESTR, PB-CKR}, BRCA2 (BRCA2 DNA repair associated) [NCBI Gene 675] {aka BRCC2, BROVCA2, FACD, FAD, FAD1, FANCD}, S100a8 (S100 calcium binding protein A8) [NCBI Gene 116547] {aka Mrp8}, Ptprc (protein tyrosine phosphatase receptor type C) [NCBI Gene 19264] {aka B220, CD45R, Cd45, L-CA, Ly-5, Lyt-4}, Ackr3 (atypical chemokine receptor 3) [NCBI Gene 84348] {aka Cmkor1, Cxcr7, Rdc1}, Egf (epidermal growth factor) [NCBI Gene 13645], S100A9 (S100 calcium binding protein A9) [NCBI Gene 6280] {aka 60B8AG, CAGB, CFAG, CGLB, L1AG, LIAG}, Cd4 (Cd4 molecule) [NCBI Gene 24932] {aka W3/25, p55}, BRCA1 (BRCA1 DNA repair associated) [NCBI Gene 672] {aka BRCAI, BRCC1, BROVCA1, FANCS, IRIS, PNCA4}, Ctla4 (cytotoxic T-lymphocyte-associated protein 4) [NCBI Gene 12477] {aka Cd152, Ctla-4, Ly-56}, Brca1 (breast cancer 1, early onset) [NCBI Gene 12189], CD274 (CD274 molecule) [NCBI Gene 29126] {aka ADMIO5, B7-H, B7H1, PD-L1, PDCD1L1, PDCD1LG1}, Cd86 (CD86 antigen) [NCBI Gene 12524] {aka B7, B7-2, B7.2, B70, CLS1, Cd28l2}, Il10 (interleukin 10) [NCBI Gene 25325] {aka IL10X, If2a}, Tgfb1 (transforming growth factor, beta 1) [NCBI Gene 21803] {aka TGF-beta1, TGFbeta1, Tgfb, Tgfb-1}, Mrc1 (mannose receptor, C type 1) [NCBI Gene 17533] {aka CD206, MR}, INS (insulin) [NCBI Gene 3630] {aka IDDM, IDDM1, IDDM2, ILPR, IRDN, MODY10}, S100a9 (S100 calcium binding protein A9) [NCBI Gene 94195] {aka Mrp14}, ARG1 (arginase 1) [NCBI Gene 383], S100a9 (S100 calcium binding protein A9 (calgranulin B)) [NCBI Gene 20202] {aka 60B8Ag, BEE22, Cagb, GAGB, L1Ag, MRP14}, Il10 (interleukin 10) [NCBI Gene 16153] {aka CSIF, If2a, Il-10}, Pglyrp1 (peptidoglycan recognition protein 1) [NCBI Gene 21946] {aka PGRP, PGRP-S, Pglyrp, Tag7, Tasg7, Tnfsf3l}, Cxcl12 (C-X-C motif chemokine ligand 12) [NCBI Gene 24772] {aka Sdf1}, Cd86 (CD86 molecule) [NCBI Gene 56822] {aka B7-2}, Stat3 (signal transducer and activator of transcription 3) [NCBI Gene 20848] {aka 1110034C02Rik, Aprf}, Trp53-ps (transformation related protein 53, pseudogene) [NCBI Gene 22060], Adgre1 (adhesion G protein-coupled receptor E1) [NCBI Gene 13733] {aka DD7A5-7, EGF-TM7, Emr1, F4/80, Gpf480, Ly71}, Cd274 (CD274 antigen) [NCBI Gene 60533] {aka A530045L16Rik, B7h1, Pdcd1l1, Pdcd1lg1, Pdl1}, EREG (epiregulin) [NCBI Gene 2069] {aka EPR, ER, Ep}, Cxcr4 (C-X-C motif chemokine receptor 4) [NCBI Gene 60628], Cd3e (CD3 antigen, epsilon polypeptide) [NCBI Gene 12501] {aka CD3, CD3epsilon, T3e}, Arg1 (arginase, liver) [NCBI Gene 11846] {aka AI, Arg-1, PGIF}, CD4 (CD4 molecule) [NCBI Gene 920] {aka CD4mut, IMD79, Leu-3, OKT4D, T4}, Cxcl12 (C-X-C motif chemokine ligand 12) [NCBI Gene 20315] {aka Pbsf, Scyb12, Sdf1, Tlsf, Tpar1}, Ly6c1 (lymphocyte antigen 6 family member C1) [NCBI Gene 17067] {aka Ly-6C, Ly-6C1, Ly6c}, STAT3 (signal transducer and activator of transcription 3) [NCBI Gene 6774] {aka ADMIO, ADMIO1, APRF, HIES}, Arg1 (arginase 1) [NCBI Gene 29221], Ccnd1 (cyclin D1) [NCBI Gene 12443] {aka CycD1, Cyl-1, PRAD1, bcl-1, cD1}, ERBB2 (erb-b2 receptor tyrosine kinase 2) [NCBI Gene 2064] {aka CD340, HER-2, HER-2/neu, HER2, MLN 19, MLN-19}, S100a8 (S100 calcium binding protein A8 (calgranulin A)) [NCBI Gene 20201] {aka 60B8Ag, B8Ag, CFAg, CP-10, Caga, MRP8}, Pdcd1 (programmed cell death 1) [NCBI Gene 18566] {aka Ly101, PD-1, Pdc1}, ATM (ATM serine/threonine kinase) [NCBI Gene 472] {aka AT1, ATA, ATC, ATD, ATDC, ATE}, PGR (progesterone receptor) [NCBI Gene 5241] {aka NR3C3, PR}, Calcr (calcitonin receptor) [NCBI Gene 12311] {aka Clr, Ct-r}, Cd8a (CD8 subunit alpha) [NCBI Gene 12525] {aka Ly-2, Ly-35, Ly-B, Lyt-2}, Brca1 (BRCA1, DNA repair associated) [NCBI Gene 497672] {aka BRCA-1}
- **Diseases:** chromosomal aberrations (MESH:D002869), MT (MESH:D060085), BRCA1-deficient cancers (MESH:D001943), viral infection (MESH:D014777), Cancer (MESH:D009369), glands (MESH:D000307), triple negative breast cancer (MESH:D064726), metastasis (MESH:D009362), tumorigenesis (MESH:D063646), aneuploidy (MESH:D000782), MG (MESH:D005348), inflammation (MESH:D007249), mammary tumor (MESH:D015674), CMs (MESH:D020763), embryonic lethality (MESH:D020964), lung (MESH:D008171), pneumococcal pneumonia (MESH:D011018), leukemic (MESH:D007938)
- **Chemicals:** DOX (MESH:D004317), Cisplatin (MESH:D002945), Triton X-100 (MESH:D017830), acetone (MESH:D000096), CM (MESH:D003476), DOX (MESH:D004318), SDS (MESH:D012967), NP-40 (MESH:C010615), TAS (MESH:C516109), EDTA (MESH:D004492), L-glutamine (MESH:D005973), Puromycin (MESH:D011691), AMD) (MESH:D008750), AMD) (MESH:C503590), FC (MESH:C095424), methanol (MESH:D000432), Formaldehyde (MESH:D005557), Cytof (-), TRIzol (MESH:C411644), FA (MESH:C030544), pentobarbital sodium (MESH:D010424), FPS-ZM1 (MESH:C572629), water (MESH:D014867), PBS (MESH:D007854), hydrocortisone (MESH:D006854), crystal violet (MESH:D005840), DDA (MESH:C000849), NaCl (MESH:D012965), DAPI (MESH:C007293), CFSE (MESH:C087165), DIA (MESH:C076868), paraffin (MESH:D010232), sodium borohydride (MESH:C025364), glycerol (MESH:D005990), C (MESH:D002244), ACN (MESH:C084683), Poly(A) (MESH:D011061), DTT (MESH:D004229), sodium deoxycholate (MESH:D003840), ACN (MESH:C032159), Lipofectamine (MESH:C086724), ethanol (MESH:D000431), CO2 (MESH:D002245), FA (MESH:D005492), TAS (MESH:D013635), SYBR-Green (MESH:C098022), xylene (MESH:D014992),  (MESH:C576329),  (MESH:D054377),  (MESH:D040502),  (MESH:C515255)
- **Species:** Homo sapiens (human, species) [taxon 9606], Mus musculus (house mouse, species) [taxon 10090]
- **Cell lines:** RAW 264.7 — Mus musculus (Mouse), Mouse leukemia, Cancer cell line (CVCL_0493), WTV6MG — Mus musculus (Mouse), Transformed cell line (CVCL_8732), sgS100a9 — Equus caballus (Horse), Transformed cell line (CVCL_C4M8), LMBG — Micropterus salmoides (Largemouth bass), Spontaneously immortalized cell line (CVCL_Y084), shBrca1 — Mus musculus (Mouse), Hybridoma (CVCL_C7RB), 545 — Homo sapiens (Human), Immune system disorder, Induced pluripotent stem cell (CVCL_IZ31), LS-C392134 — Homo sapiens (Human), Neuroblastoma, Cancer cell line (CVCL_2105), RB6-8C5 — Rattus norvegicus (Rat), Hybridoma (CVCL_J603), EMT6 — Mus musculus (Mouse), Malignant neoplasms of the mouse mammary gland, Cancer cell line (CVCL_1923), Brca1-MT — Homo sapiens (Human), Childhood T acute lymphoblastic leukemia, Cancer cell line (CVCL_J653), G600 — Homo sapiens (Human), Transformed cell line (CVCL_AA11), Balb/ — Mus musculus (Mouse), Spontaneously immortalized cell line (CVCL_0637), MTV4MG — Mus musculus (Mouse), Malignant neoplasms of the mouse mammary gland, Cancer cell line (CVCL_M058), WTMG — Bos taurus (Bovine), Spontaneously immortalized cell line (CVCL_HG39), Brca1Co — Homo sapiens (Human), Human papillomavirus-related endocervical adenocarcinoma, Cancer cell line (CVCL_D280), 293T — Homo sapiens (Human), Transformed cell line (CVCL_0063), MDA-MB-231 — Homo sapiens (Human), Breast adenocarcinoma, Cancer cell line (CVCL_0062), B477 — Homo sapiens (Human), Induced pluripotent stem cell (CVCL_C1RY), 231 — Mus musculus (Mouse), Hybridoma (CVCL_L524), WTV4MG — Trichoplusia ni (Cabbage looper), Spontaneously immortalized cell line (CVCL_Z093), -8C5 — Mus musculus (Mouse), Hybridoma (CVCL_C2IH), BALB/c — Mus musculus (Mouse), Spontaneously immortalized cell line (CVCL_0184)

## Figures

8 figures with captions in the complete paper: https://tomesphere.com/paper/PMC8933470/full.md

---
Source: https://tomesphere.com/paper/PMC8933470