# Siderophore-mediated zinc acquisition enhances enterobacterial colonization of the inflamed gut

**Authors:** Judith Behnsen, Hui Zhi, Allegra T. Aron, Vivekanandan Subramanian, William Santus, Michael H. Lee, Romana R. Gerner, Daniel Petras, Janet Z. Liu, Keith D. Green, Sarah L. Price, Jose Camacho, Hannah Hillman, Joshua Tjokrosurjo, Nicola P. Montaldo, Evelyn M. Hoover, Sean Treacy-Abarca, Benjamin A. Gilston, Eric P. Skaar, Walter J. Chazin, Sylvie Garneau-Tsodikova, Matthew B. Lawrenz, Robert D. Perry, Sean-Paul Nuccio, Pieter C. Dorrestein, Manuela Raffatellu

PMC · DOI: 10.1038/s41467-021-27297-2 · Nature Communications · 2021-12-01

## TL;DR

This study shows how a probiotic E. coli strain uses a molecule called yersiniabactin to acquire zinc, helping it survive in the inflamed gut.

## Contribution

The study reveals a novel zinc acquisition mechanism via yersiniabactin in E. coli Nissle 1917.

## Key findings

- Nissle uses yersiniabactin as a zincophore to grow in zinc-limited environments.
- Yersiniabactin's zinc binding increases with higher pH, influencing metal acquisition.
- This mechanism allows Nissle to tolerate calprotectin and thrive in the inflamed gut.

## Abstract

Zinc is an essential cofactor for bacterial metabolism, and many Enterobacteriaceae express the zinc transporters ZnuABC and ZupT to acquire this metal in the host. However, the probiotic bacterium Escherichia coli Nissle 1917 (or “Nissle”) exhibits appreciable growth in zinc-limited media even when these transporters are deleted. Here, we show that Nissle utilizes the siderophore yersiniabactin as a zincophore, enabling Nissle to grow in zinc-limited media, to tolerate calprotectin-mediated zinc sequestration, and to thrive in the inflamed gut. We also show that yersiniabactin’s affinity for iron or zinc changes in a pH-dependent manner, with increased relative zinc binding as the pH increases. Thus, our results indicate that siderophore metal affinity can be influenced by the local environment and reveal a mechanism of zinc acquisition available to commensal and pathogenic Enterobacteriaceae.

Zinc is an essential cofactor for bacterial metabolism. Here, the authors show that the probiotic bacterium Escherichia coli Nissle 1917 utilizes the siderophore yersiniabactin as a zincophore, allowing the microbe to grow in zinc-limited media and to thrive in the inflamed gut.

## Linked entities

- **Proteins:** zupT (zinc transporter)
- **Chemicals:** zinc (PubChem CID 23994), yersiniabactin (PubChem CID 443589)
- **Species:** Escherichia coli Nissle 1917 (taxon 316435)

## Full-text entities

- **Genes:** Il17a (interleukin 17A) [NCBI Gene 16171] {aka Ctla-8, Ctla8, IL-17, IL-17A, Il17}, TetRA [NCBI Gene 7256841], S100a8 (S100 calcium binding protein A8 (calgranulin A)) [NCBI Gene 20201] {aka 60B8Ag, B8Ag, CFAg, CP-10, Caga, MRP8}, Lcn2 (lipocalin 2) [NCBI Gene 16819] {aka 24p3, NRL, Sip24}, Ifng (interferon gamma) [NCBI Gene 15978] {aka IFN-g, If2f, Ifg}, S100a9 (S100 calcium binding protein A9 (calgranulin B)) [NCBI Gene 20202] {aka 60B8Ag, BEE22, Cagb, GAGB, L1Ag, MRP14}, Actb (actin, beta) [NCBI Gene 11461] {aka Actx, E430023M04Rik, beta-actin}, TetR [NCBI Gene 7324557], Il22 (interleukin 22) [NCBI Gene 50929] {aka IL-22, IL-22a, ILTIFa, If2b1, Iltif}, KanR [NCBI Gene 7872406], stm (stumpy) [NCBI Gene 20882], Tnf (tumor necrosis factor) [NCBI Gene 21926] {aka DIF, TNF-a, TNF-alpha, TNFSF2, TNFalpha, Tnfa}, Ireb2 (iron responsive element binding protein 2) [NCBI Gene 64602] {aka D9Ertd85e, Irp2}
- **Diseases:** zinc deficiency (MESH:C564286), colitis (MESH:D003092), Inflammation (MESH:D007249), intestinal disorders (MESH:D007410), EcN (MESH:D004927), ulcerative colitis (MESH:D003093), infection (MESH:D007239), inflammatory bowel disease (MESH:D015212), diarrhea (MESH:D003967), urinary tract infection (MESH:D014552), edema (MESH:D004487), abscesses (MESH:D000038), weight loss (MESH:D015431), gastroenteritis (MESH:D005759), toxicity (MESH:D064420), Nissle 1917 (MESH:D012183), injury (MESH:D014947), chronic constipation (MESH:D003248)
- **Chemicals:** biotin (MESH:D001710), acetonitrile (MESH:C032159), Metal (MESH:D008670), hematoxylin (MESH:D006416), Kanamycin (MESH:D007612), ethanol (MESH:D000431), chromium (MESH:D002857), reactive oxygen species (MESH:D017382), FA (MESH:D005492), SYBR Green (MESH:C098022), Na+ (MESH:D012964), Carb (MESH:D000073893), Chloramphenicol (MESH:D002701), iron chloride (MESH:C024555), cobalt (MESH:D003035), ammonium hydroxide (MESH:D064753), MgSO4 (MESH:D008278), Carb (MESH:D002228), heme (MESH:D006418), ferrioxamine (MESH:C002577), eosin (MESH:D004801), paraffin (MESH:D010232), nickel (MESH:D009532), sucrose (MESH:D013395), zinc acetate (MESH:D019345), salmochelin (MESH:C000630262), ZnCl2 (MESH:C016837), aerobactin (MESH:C031819), Pyochelin (MESH:C025316), FeCl2 (MESH:C029451), ZnSO4 (MESH:D019287), thiamin (MESH:D013831), NH4Cl (MESH:D000643), agar (MESH:D000362), EcN (MESH:C115894), Acetic acid (MESH:D019342), H+ (MESH:D006859), Ybt (MESH:C104398), H2O (MESH:D014867), NiCl2 (MESH:C022838), H&amp;E (MESH:D006371), Xgal (MESH:C044888), 2H (MESH:D003903), NaCl (MESH:D012965), lactate (MESH:D019344), formalin (MESH:D005557), N (MESH:D009584), EcN (-), gallium (MESH:D005708), formic acid (MESH:C030544), Cm (MESH:D003476), K+ (MESH:D011188), D2O (MESH:D017666), Zinc (MESH:D015032), Iron (MESH:D007501), copper (MESH:D003300), methanol (MESH:D000432), ammonium acetate (MESH:C018824), manganese (MESH:D008345), Nal (MESH:D009268)
- **Species:** Pseudomonas sp. (species) [taxon 306], Mus musculus (house mouse, species) [taxon 10090], Escherichia coli (E. coli, species) [taxon 562], Yersinia enterocolitica (species) [taxon 630], Escherichia coli S17 (strain) [taxon 1227813], Homo sapiens (human, species) [taxon 9606], Escherichia coli Nissle 1917 (strain) [taxon 316435], Saccharomyces cerevisiae (baker's yeast, species) [taxon 4932], Rubroshorea almon (species) [taxon 292004], Salmonella enterica subsp. enterica serovar Typhimurium (no rank) [taxon 90371], Yersinia pestis (species) [taxon 632], Escherichia coli CFT073 (strain) [taxon 199310], Enterobacteriaceae (enterobacteria, family) [taxon 543], Burkholderia cepacia (species) [taxon 292], Klebsiella pneumoniae (species) [taxon 573], Shigella (genus) [taxon 620], Salmonella enterica subsp. enterica serovar Typhi (no rank) [taxon 90370]
- **Cell lines:** TOP10 — Homo sapiens (Human), Chronic myelogenous leukemia, BCR-ABL1 positive, Cancer cell line (CVCL_TT29), C57BL/6 — Mus musculus (Mouse), Transformed cell line (CVCL_C0MU), EcN — Mus musculus (Mouse), Hybridoma (CVCL_C5CR), DH5alpha — Drosophila hydei (Fruit fly), Spontaneously immortalized cell line (CVCL_Z531), MSC74 — Homo sapiens (Human), Induced pluripotent stem cell (CVCL_9S78)

## Full text

_Full body text omitted from this summary view._ Fetch the complete paper as Markdown: https://tomesphere.com/paper/PMC8636617/full.md

## Figures

5 figures with captions in the complete paper: https://tomesphere.com/paper/PMC8636617/full.md

## References

87 references — full list in the complete paper: https://tomesphere.com/paper/PMC8636617/full.md

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Source: https://tomesphere.com/paper/PMC8636617