# M6A associated TSUC7 inhibition contributed to Erlotinib resistance in lung adenocarcinoma through a notch signaling activation dependent way

**Authors:** Kai Li, Zi-Yang Peng, Shan Gao, Qing-Shi Wang, Rui Wang, Xiang Li, Guo-Dong Xiao, Jing Zhang, Hong Ren, Shou-Ching Tang, Xin Sun

PMC · DOI: 10.1186/s13046-021-02137-9 · 2021-10-16

## TL;DR

This paper explores how m6A regulation and TUSC7 inhibition contribute to Erlotinib resistance in lung cancer through Notch signaling activation.

## Contribution

The study reveals a novel m6A-dependent mechanism involving TUSC7 and Notch signaling in Erlotinib resistance in lung adenocarcinoma.

## Key findings

- m6A regulators METTL3 and YTHDF2 control stemness and EMT features linked to resistance.
- miR-146a/Notch signaling is activated in an m6A-dependent manner, suppressing TUSC7.
- Notch signaling inhibition reverses Erlotinib resistance in PC9ER and HCC827ER cells.

## Abstract

The small tyrosine kinase inhibitors (TKIs) subversively altered the lung cancer treatments, but patients will inevitably face the therapy resistance and disease recurrence. We aim to explore the potential roles of non-coding RNAs in sensitizing the TKIs effects. Methods: Multiple cellular and molecular detections were applied to confirm the mechanistic regulations and intracellular connections.

We explored the specific gene features of candidates in association with resistance, and found that m6A controlled the stemness of EMT features through METTL3 and YTHDF2. The miR-146a/Notch signaling was sustained highly activated in a m6A dependent manner, and the m6A regulator of YTHDF2 suppressed TUSC7, both of which contributed to the resistant features. Functionally, the sponge type of TUSC7 regulation of miR-146a inhibited Notch signaling functions, and affected the cancer progression and stem cells’ renewal in Erlotinib resistant PC9 cells (PC9ER) and Erlotinib resistant HCC827 cells (HCC827ER) cells. The Notch signaling functions manipulated the cMYC and DICER inner cytoplasm, and the absence of either cMYC or DICER1 lead to TUSC7 and miR-146a decreasing respectively, formed the closed circle to maintain the balance.

PC9ER and HCC827ER cells harbored much more stem-like cells, and the resistance could be reversed by Notch signaling inactivation. The intrinsic miR-146 and TUSC7 levels are monitored by m6A effectors, the alternation of either miR-146 or TUSC7 expression could lead to the circling loop to sustain the new homeostasis. Further in clinics, the combined delivery of TKIs and Notch specific inhibitory non-coding RNAs will pave the way for yielding the susceptibility to targeted therapy in lung cancer.

The online version contains supplementary material available at 10.1186/s13046-021-02137-9.

## Linked entities

- **Genes:** METTL3 (methyltransferase 3, N6-adenosine-methyltransferase complex catalytic subunit) [NCBI Gene 56339], YTHDF2 (YTH N6-methyladenosine RNA binding protein F2) [NCBI Gene 51441], TUSC7 (tumor suppressor candidate 7) [NCBI Gene 285194], MIR146A (microRNA 146a) [NCBI Gene 406938], MYC (MYC proto-oncogene, bHLH transcription factor) [NCBI Gene 4609], DICER1 (dicer 1, ribonuclease III) [NCBI Gene 23405]
- **Chemicals:** Erlotinib (PubChem CID 176870)
- **Diseases:** lung adenocarcinoma (MONDO:0005061)

## Full-text entities

- **Genes:** YTHDF2 (YTH N6-methyladenosine RNA binding protein F2) [NCBI Gene 51441] {aka CAHL, DF2, HGRG8, NY-REN-2}, CIRSR (corepressor of RBPJ and splicing regulator) [NCBI Gene 9541] {aka CIR, CIR1, THE1B/CIR1}, KRAS (KRAS proto-oncogene, GTPase) [NCBI Gene 3845] {aka 'C-K-RAS, C-K-RAS, CFC2, K-RAS2A, K-RAS2B, K-RAS4A}, CCND1 (cyclin D1) [NCBI Gene 595] {aka BCL1, D11S287E, PRAD1, U21B31}, DTX2 (deltex E3 ubiquitin ligase 2) [NCBI Gene 113878] {aka RNF58}, TXK (TXK tyrosine kinase) [NCBI Gene 7294] {aka BTKL, PSCTK5, PTK4, RLK, TKL}, METTL3 (methyltransferase 3, N6-adenosine-methyltransferase complex catalytic subunit) [NCBI Gene 56339] {aka IME4, M6A, MT-A70, Spo8, hMETTL3}, NUMB (NUMB endocytic adaptor protein) [NCBI Gene 8650] {aka C14orf41, S171, c14_5527}, PPP1R1A (protein phosphatase 1 regulatory inhibitor subunit 1A) [NCBI Gene 5502] {aka I1, IPP1}, EGF (epidermal growth factor) [NCBI Gene 1950] {aka HOMG4, URG}, SNW1 (SNW domain containing 1) [NCBI Gene 22938] {aka Bx42, FUN20, NCOA-62, PRPF45, Prp45, SKIIP}, SNAI1 (snail family transcriptional repressor 1) [NCBI Gene 6615] {aka SLUGH2, SNA, SNAH, SNAIL, SNAIL1, dJ710H13.1}, NOTCH1 (notch receptor 1) [NCBI Gene 4851] {aka AOS5, AOVD1, TAN1, hN1}, NOTCH4 (notch receptor 4) [NCBI Gene 4855] {aka INT3}, DICER1 (dicer 1, ribonuclease III) [NCBI Gene 23405] {aka DCR1, Dicer, Dicer1e, GLOW, HERNA, K12H4.8-LIKE}, ALDH1A1 (aldehyde dehydrogenase 1 family member A1) [NCBI Gene 216] {aka ALDC, ALDH-E1, ALDH1, ALDH11, HEL-9, HEL-S-53e}, CTBP2 (C-terminal binding protein 2) [NCBI Gene 1488], DVL1 (dishevelled segment polarity protein 1) [NCBI Gene 1855] {aka DRS2, DVL, DVL1L1}, NOTCH3 (notch receptor 3) [NCBI Gene 4854] {aka CADASIL, CADASIL1, CARASIL1, CASIL, FPLD1, IMF2}, PRL (prolactin) [NCBI Gene 5617] {aka GHA1, pPRL}, HDAC2 (histone deacetylase 2) [NCBI Gene 3066] {aka HD2, KDAC2, RPD3, YAF1}, CREBBP (CREB binding lysine acetyltransferase) [NCBI Gene 1387] {aka CBP, KAT3A, MKHK1, RSTS, RSTS1}, MAPK1 (mitogen-activated protein kinase 1) [NCBI Gene 5594] {aka ERK, ERK-2, ERK2, ERT1, MAPK2, NS13}, DTX1 (deltex E3 ubiquitin ligase 1) [NCBI Gene 1840] {aka RNF140, hDx-1}, MYC (MYC proto-oncogene, bHLH transcription factor) [NCBI Gene 4609] {aka MRTL, MYCC, bHLHe39, c-Myc}, VCL (vinculin) [NCBI Gene 7414] {aka CMD1W, CMH15, HEL114, MV, MVCL, VINC}, HDAC1 (histone deacetylase 1) [NCBI Gene 3065] {aka GON-10, HD1, KDAC1, RPD3, RPD3L1}, MALAT1 (metastasis associated lung adenocarcinoma transcript 1) [NCBI Gene 378938] {aka HCN, LINC00047, NCRNA00047, NEAT2, PRO2853, miPEP-52}, NCSTN (nicastrin) [NCBI Gene 23385] {aka ATAG1874}, MIR146A (microRNA 146a) [NCBI Gene 406938] {aka MIRN146, MIRN146A, miR-146a, miRNA146A}, TUSC7 (tumor suppressor candidate 7) [NCBI Gene 285194] {aka LINC00902, LSAMP-AS3, NCRNA00295}, DTX3 (deltex E3 ubiquitin ligase 3) [NCBI Gene 196403] {aka RNF154, deltex3}, ATG3 (autophagy related 3) [NCBI Gene 64422] {aka APG3, APG3-LIKE, APG3L, PC3-96, hApg3}, NCOR2 (nuclear receptor corepressor 2) [NCBI Gene 9612] {aka CTG26, N-CoR2, SMAP270, SMRT, SMRTE, SMRTE-tau}, FGF2 (fibroblast growth factor 2) [NCBI Gene 2247] {aka BFGF, FGF-2, FGFB, HBGF-2}, RBPJL (recombination signal binding protein for immunoglobulin kappa J region like) [NCBI Gene 11317] {aka RBPL, RBPSUHL, SUHL}, EGFR (epidermal growth factor receptor) [NCBI Gene 1956] {aka ERBB, ERBB1, ERRP, HER1, NISBD2, NNCIS}, NOTCH2 (notch receptor 2) [NCBI Gene 4853] {aka AGS2, HJCYS, hN2}, CTBP1 (C-terminal binding protein 1) [NCBI Gene 1487] {aka BARS, HADDTS}, INS (insulin) [NCBI Gene 3630] {aka IDDM, IDDM1, IDDM2, ILPR, IRDN, MODY10}, RBPJ (recombination signal binding protein for immunoglobulin kappa J region) [NCBI Gene 3516] {aka AOS3, CBF-1, CBF1, IGKJRB, IGKJRB1, KBF2}, APH1A (aph-1A gamma-secretase subunit) [NCBI Gene 51107] {aka 6530402N02Rik, APH-1, APH-1A, CGI-78}, Gpm6a (glycoprotein m6a) [NCBI Gene 234267] {aka Gpm6, M6A}
- **Diseases:** Lung cancer (MESH:D008175), CAN (MESH:D007674), Pan-Cancer (MESH:D009369), Lung adenocarcinoma (MESH:D000077192), adenocarcinoma (MESH:D000230)
- **Chemicals:** PBS (MESH:D007854), Erlotinib (MESH:D000069347), TRIzol (MESH:C411644), FLI-06 (MESH:C000621625), Aldefluor  assay buffer (-), SDS (MESH:D012967), PI (MESH:D011419), paraformaldehyde (MESH:C003043), N-6-methyladenosine (MESH:C010223), CO2 (MESH:D002245), ice (MESH:D007053), biotin (MESH:D001710), M6A (MESH:C005955), streptomycin (MESH:D013307), A. (MESH:D001151), paraffin (MESH:D010232), penicillin (MESH:D010406)
- **Species:** Homo sapiens (human, species) [taxon 9606], Mus musculus (house mouse, species) [taxon 10090]
- **Mutations:** T790M
- **Cell lines:** HCC827 — Homo sapiens (Human), Lung adenocarcinoma, Cancer cell line (CVCL_2063), H1975 — Homo sapiens (Human), Lung adenocarcinoma, Cancer cell line (CVCL_1511), S2E — Mus musculus (Mouse), Hybridoma (CVCL_C5DX), PC9 — Homo sapiens (Human), Lung adenocarcinoma, Cancer cell line (CVCL_B260), BALB/cA — Drosophila melanogaster (Fruit fly), Spontaneously immortalized cell line (CVCL_Z839), PC9ER — Homo sapiens (Human), Lung adenocarcinoma, Cancer cell line (CVCL_S750), S2H — Homo sapiens (Human), Soft tissue sarcoma, Cancer cell line (CVCL_JB75), HCC827ER — Homo sapiens (Human), Lung adenocarcinoma, Cancer cell line (CVCL_V408), 293 T — Homo sapiens (Human), Transformed cell line (CVCL_0063)

## Figures

5 figures with captions in the complete paper: https://tomesphere.com/paper/PMC8520306/full.md

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Source: https://tomesphere.com/paper/PMC8520306