# Overview on the Prevalence of Fungal Infections, Immune Response, and Microbiome Role in COVID-19 Patients

**Authors:** Maryam Roudbary, Sunil Kumar, Awanish Kumar, Lucia Černáková, Fatemeh Nikoomanesh, Célia F. Rodrigues

PMC · DOI: 10.3390/jof7090720 · Journal of Fungi · 2021-09-02

## TL;DR

This review explores how fungal infections like aspergillosis and candidemia are common in severe COVID-19 patients and how immune responses and the microbiome may influence these infections.

## Contribution

The paper provides a comprehensive overview of fungal co-infections in severe COVID-19 and highlights the role of the microbiome in disease progression.

## Key findings

- Fungal co-infections are increasingly linked to severe illness and death in ICU COVID-19 patients.
- The microbiome may play a role in the immune response to fungal infections in these patients.
- Early diagnosis and treatment of fungal infections are crucial to prevent severe outcomes.

## Abstract

Patients with severe COVID-19, such as individuals in intensive care units (ICU), are exceptionally susceptible to bacterial and fungal infections. The most prevalent fungal infections are aspergillosis and candidemia. Nonetheless, other fungal species (for instance, Histoplasma spp., Rhizopus spp., Mucor spp., Cryptococcus spp.) have recently been increasingly linked to opportunistic fungal diseases in COVID-19 patients. These fungal co-infections are described with rising incidence, severe illness, and death that is associated with host immune response. Awareness of the high risks of the occurrence of fungal co-infections is crucial to downgrade any arrear in diagnosis and treatment to support the prevention of severe illness and death directly related to these infections. This review analyses the fungal infections, treatments, outcome, and immune response, considering the possible role of the microbiome in these patients. The search was performed in Medline (PubMed), using the words “fungal infections COVID-19”, between 2020–2021.

## Linked entities

- **Diseases:** COVID-19 (MONDO:0100096), aspergillosis (MONDO:0005657), candidemia (MONDO:0044070)

## Full-text entities

- **Genes:** AHR (aryl hydrocarbon receptor) [NCBI Gene 196] {aka FVH3, RP85, bHLHe76}, IL12B (interleukin 12B) [NCBI Gene 3593] {aka CLMF, CLMF2, IL-12B, IMD28, IMD29, NKSF}, IL1B (interleukin 1 beta) [NCBI Gene 3553] {aka IL-1, IL1-BETA, IL1F2, IL1beta}, TNF (tumor necrosis factor) [NCBI Gene 7124] {aka DIF, IMD127, TNF-alpha, TNFA, TNFSF2, TNLG1F}, IL1RN (interleukin 1 receptor antagonist) [NCBI Gene 3557] {aka CRMO2, DIRA, ICIL-1RA, IL-1RN, IL-1ra, IL-1ra3}, IL10 (interleukin 10) [NCBI Gene 3586] {aka CSIF, GVHDS, IL-10, IL10A, TGIF}, CD80 (CD80 molecule) [NCBI Gene 941] {aka B7, B7-1, B7.1, BB1, CD28LG, CD28LG1}, CD4 (CD4 molecule) [NCBI Gene 920] {aka CD4mut, IMD79, Leu-3, OKT4D, T4}, IL1A (interleukin 1 alpha) [NCBI Gene 3552] {aka IL-1 alpha, IL-1A, IL1, IL1-ALPHA, IL1F1}, CD244 (CD244 molecule) [NCBI Gene 51744] {aka 2B4, NAIL, NKR2B4, Nmrk, SLAMF4}, IFNA1 (interferon alpha 1) [NCBI Gene 3439] {aka IFL, IFN, IFN-ALPHA, IFN-alphaD, IFNA13, IFNA@}, NLRP3 (NLR family pyrin domain containing 3) [NCBI Gene 114548] {aka AGTAVPRL, AII, AVP, C1orf7, CIAS1, CLR1.1}, ACE2 (angiotensin converting enzyme 2) [NCBI Gene 59272] {aka ACEH}, IFNG (interferon gamma) [NCBI Gene 3458] {aka IFG, IFI, IMD69}, CXCL8 (C-X-C motif chemokine ligand 8) [NCBI Gene 3576] {aka GCP-1, GCP1, IL8, LECT, LUCT, LYNAP}, CD8A (CD8 subunit alpha) [NCBI Gene 925] {aka CD8, CD8alpha, IMD116, Leu2, p32}, CRP (C-reactive protein) [NCBI Gene 1401] {aka PTX1}, IL6 (interleukin 6) [NCBI Gene 3569] {aka BSF-2, BSF2, CDF, HGF, HSF, IFN-beta-2}
- **Diseases:** opportunistic (MESH:D009894), Renal failure (MESH:D051437), lymphocytopenia (MESH:D008231), colonized (MESH:D003108), leg (MESH:D010264), type-2 diabetes (MESH:D003924), immune dysregulation (OMIM:614878), Type-2 diabetesischemic heart diseasestadium IV (OMIM:614980), oral candidiasis (MESH:D002180), inflammation (MESH:D007249), Aspergillosis (MESH:D001228), bladder cancer (MESH:D001749), infectious disease (MESH:D003141), Intestinal dysbiosis (MESH:D064806), CKD (MESH:D012080), dyslipidemia (MESH:D050171), UTI (MESH:D014552), heart failure (MESH:D006333), organ failure (MESH:D009102), thrombosis (MESH:D013927), oral and systemic candidiasis (MESH:C536777), bacterial pneumonia (MESH:D018410), hypothyroidism (MESH:D007037), pneumonia (MESH:D011014), ischemic cardiomyopathy (MESH:D009202), RA (MESH:D001172), Morbidity (OMIM:614963), CAC (MESH:D000086382), subarachnoid hemorrhagesuperimposed (MESH:D013345), Candidemia (MESH:D058387), sinusitis (MESH:D012852), pulmonary aspergillosis (MESH:D055732), proptosis (MESH:D005094), C. auris bloodstream infections (MESH:C000656864), bacterial superinfection (MESH:D015163), CGD (MESH:D006105), respiratory symptoms (MESH:D012818), sepsis (MESH:D018805), Asthma (MESH:D001249), bacterial, fungal, or viral infections (MESH:D014777), edema (MESH:D004487), mucosal damage (MESH:D052016), DM (MESH:D009223), end stage renal disease (MESH:D007676), co (MESH:D060085), ophthalmoplegia (MESH:D009886), endemic (MESH:D006043), bacterial (MESH:D001424), acute respiratory disease/distress (MESH:D012128), nosocomial infection (MESH:D003428), Diabetes (MESH:D003920), respiratory disease/ (MESH:D012140), invasive candidiasis (MESH:D058365), IPA (MESH:D055744), dyspnea (MESH:D004417), mycosis (MESH:D015821), chronic kidney disease (MESH:D051436), headache (MESH:D006261), lung disorders (MESH:D008171), fever (MESH:D005334)
- **Species:** Candida dubliniensis (species) [taxon 42374], Pneumocystis jirovecii (species) [taxon 42068], Streptococcus thermophilus (species) [taxon 1308], Clavispora lusitaniae (species) [taxon 36911], Candida albicans (species) [taxon 5476], Aspergillus fumigatus (species) [taxon 746128], Cryptococcus (genus) [taxon 79213], Enterobacterales (order) [taxon 91347], Saccharomyces cerevisiae (baker's yeast, species) [taxon 4932], Homo sapiens (human, species) [taxon 9606], Cryptococcus neoformans (Cryptococcus neoformans serotype A, species) [taxon 5207], Severe acute respiratory syndrome coronavirus 2 (no rank) [taxon 2697049], Sagamiharavirus PP (species) [taxon 2956385], Human immunodeficiency virus 1 (no rank) [taxon 11676], Fusarium proliferatum (species) [taxon 948311], Rhizopus (genus) [taxon 4842], Lactobacillus acidophilus (species) [taxon 1579], Bifidobacterium bifidum (species) [taxon 1681], Human immunodeficiency virus (species) [taxon 12721], Lodderomyces parapsilosis (species) [taxon 5480], Mus musculus (house mouse, species) [taxon 10090], Candidozyma duobushaemuli (species) [taxon 1231522], Pichia kudriavzevii (species) [taxon 4909], Nakaseomyces glabratus (species) [taxon 5478], Bacillus subtilis (species) [taxon 1423], Hepatitis B virus (no rank) [taxon 10407], Gammacoronavirus (genus) [taxon 694013], Pneumocystis (genus) [taxon 4753], Cunninghamella (genus) [taxon 4852], A. flavus [taxon 315677], Candida tropicalis (species) [taxon 5482], Candidozyma auris (species) [taxon 498019], Coccidioides posadasii (species) [taxon 199306], Histoplasma capsulatum (species) [taxon 5037], Coccidioides immitis (species) [taxon 5501]
- **Mutations:** K143R, A640V

## Full text

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## References

196 references — full list in the complete paper: https://tomesphere.com/paper/PMC8466761/full.md

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Source: https://tomesphere.com/paper/PMC8466761