# Investigating crosstalk between H3K27 acetylation and H3K4 trimethylation in CRISPR/dCas-based epigenome editing and gene activation

**Authors:** Weiye Zhao, Ying Xu, Yufan Wang, Dan Gao, Jasmine King, Yajie Xu, Fu-Sen Liang

PMC · DOI: 10.1038/s41598-021-95398-5 · Scientific Reports · 2021-08-05

## TL;DR

This paper explores how two histone modifications, H3K27ac and H3K4me3, interact during gene activation using CRISPR/dCas-based epigenome editing.

## Contribution

It reveals that H3K27ac induces H3K4me3 and gene activation, while H3K4me3 alone does not, and identifies BRD2 as the mediator of this crosstalk.

## Key findings

- Ectopic H3K27ac in promoters leads to H3K4me3 enrichment and gene activation.
- H3K4me3 installation alone does not induce H3K27ac or gene activation.
- BRD2, not BRD4, mediates H3K4me3 installation and gene activation upon H3K27ac writing.

## Abstract

Epigenome editing methods enable the precise manipulation of epigenetic modifications, such as histone posttranscriptional modifications (PTMs), for uncovering their biological functions. While histone PTMs have been correlated with certain gene expression status, the causalities remain elusive. Histone H3 Lysine 27 acetylation (H3K27ac) and histone H3 Lysine 4 trimethylation (H3K4me3) are both associated with active genes, and located at active promoters and enhancers or around transcriptional start sites (TSSs). Although crosstalk between histone lysine acetylation and H3K4me3 has been reported, relationships between specific epigenetic marks during transcriptional activation remain largely unclear. Here, using clustered regularly interspaced short palindromic repeats (CRISPR)/dCas-based epigenome editing methods, we discovered that the ectopic introduction of H3K27ac in the promoter region lead to H3K4me3 enrichment around TSS and transcriptional activation, while H3K4me3 installation at the promoter cannot induce H3K27ac increase and failed to activate gene expression. Blocking the reading of H3K27ac by BRD proteins using inhibitor JQ1 abolished H3K27ac-induced H3K4me3 installation and downstream gene activation. Furthermore, we uncovered that BRD2, not BRD4, mediated H3K4me3 installation and gene activation upon H3K27ac writing. Our studies revealed the relationships between H3K27ac and H3K4me3 in gene activation process and demonstrated the application of CRISPR/dCas-based epigenome editing methods in elucidating the crosstalk between epigenetic mechanisms.

## Linked entities

- **Proteins:** BRD2 (bromodomain containing 2), BRD4 (bromodomain containing 4)
- **Chemicals:** JQ1 (PubChem CID 46907787)

## Full-text entities

- **Genes:** wds (will die slowly) [NCBI Gene 53428] {aka CG17437, Dmel\CG17437, EG:BACR25B3.7, WD5, WDR5, dWds}, GAPDH (glyceraldehyde-3-phosphate dehydrogenase) [NCBI Gene 2597] {aka G3PD, GAPD, HEL-S-162eP}, BRD4 (bromodomain containing 4) [NCBI Gene 23476] {aka CAP, CDLS6, FSHRG4, HUNK1, HUNKI, MCAP}, MYOD1 (myogenic differentiation 1) [NCBI Gene 4654] {aka CMYO17, CMYP17, MYF3, MYOD, MYODRIF, PUM}, His2Av (Histone H2A variant) [NCBI Gene 43229] {aka *i H2av, 5499, CG5499, Dmel\CG5499, H2A, H2A.F/Z}, IL1RN (interleukin 1 receptor antagonist) [NCBI Gene 3557] {aka CRMO2, DIRA, ICIL-1RA, IL-1RN, IL-1ra, IL-1ra3}, SFRP4 (secreted frizzled related protein 4) [NCBI Gene 6424] {aka FRP-4, FRPHE, FRZB-2, PYL, sFRP-4}, GRM2 (glutamate metabotropic receptor 2) [NCBI Gene 2912] {aka GLUR2, GPRC1B, MGLUR2, mGlu2}, dve (defective proventriculus) [NCBI Gene 37546] {aka CG5799, Dmel\CG5799, Dve-s, SATB1, dep, l(2)01738}, DNER (delta/notch like EGF repeat containing) [NCBI Gene 92737] {aka UNQ26, bet}, PRDM9 (PR/SET domain 9) [NCBI Gene 56979] {aka KMT8B, MEISETZ, MSBP3, PFM6, ZNF899}, BRD2 (bromodomain containing 2) [NCBI Gene 6046] {aka BRD2-IT1, D6S113E, FSH, FSHRG1, FSRG1, NAT}, SETD1A (SET domain containing 1A, histone lysine methyltransferase) [NCBI Gene 9739] {aka EPEDD, EPEO2, KMT2F, NEDSID, Set1, Set1A}, EP300 (EP300 lysine acetyltransferase) [NCBI Gene 2033] {aka KAT3B, MKHK2, RSTS2, p300}, WDR5 (WD repeat domain 5) [NCBI Gene 11091] {aka BIG-3, BIG3, CFAP89, SWD3}
- **Diseases:** CD (MESH:D003424)
- **Chemicals:** glycine (MESH:D005998), ethanol (MESH:D000431), carbon dioxide (MESH:D002245), SYBR green (MESH:C098022), salt (MESH:D012492), glucose (MESH:D005947), DMSO (MESH:D004121), SDS (MESH:D012967), isopropanol (MESH:D019840), chloroform (MESH:D002725), formaldehyde (MESH:D005557), DMEM (-), IP (MESH:C041508), Trizol (MESH:C411644), water (MESH:D014867), PBS (MESH:D007854), NaCl (MESH:D012965)
- **Species:** Drosophila melanogaster (fruit fly, species) [taxon 7227], Homo sapiens (human, species) [taxon 9606]
- **Mutations:** S208I, C for 10-30, C for 3-5, C for 10-15
- **Cell lines:** HEK293T — Homo sapiens (Human), Transformed cell line (CVCL_0063)

## Full text

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## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC8342468/full.md

## References

60 references — full list in the complete paper: https://tomesphere.com/paper/PMC8342468/full.md

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Source: https://tomesphere.com/paper/PMC8342468