# Melanoma subpopulations that rapidly escape MAPK pathway inhibition incur DNA damage and rely on stress signalling

**Authors:** Chen Yang, Chengzhe Tian, Timothy E. Hoffman, Nicole K. Jacobsen, Sabrina L. Spencer

PMC · DOI: 10.1038/s41467-021-21549-x · Nature Communications · 2021-03-19

## TL;DR

Some melanoma cells quickly escape BRAF inhibitor treatment through non-genetic means, causing DNA damage and relying on stress signals to survive.

## Contribution

The study reveals non-genetic mechanisms enabling rapid drug escape in melanoma cells under BRAF inhibitor treatment.

## Key findings

- A subset of melanoma cells escapes BRAF inhibition within three days via non-genetic mechanisms.
- Escaped cells rely on ATF4 stress signaling and experience DNA replication defects.
- These cells out-proliferate others over time despite DNA damage.

## Abstract

Despite the increasing number of effective anti-cancer therapies, successful treatment is limited by the development of drug resistance. While the contribution of genetic factors to drug resistance is undeniable, little is known about how drug-sensitive cells first evade drug action to proliferate in drug. Here we track the responses of thousands of single melanoma cells to BRAF inhibitors and show that a subset of cells escapes drug via non-genetic mechanisms within the first three days of treatment. Cells that escape drug rely on ATF4 stress signalling to cycle periodically in drug, experience DNA replication defects leading to DNA damage, and yet out-proliferate other cells over extended treatment. Together, our work reveals just how rapidly melanoma cells can adapt to drug treatment, generating a mutagenesis-prone subpopulation that expands over time.

BRAF inhibitors are used to treat late-stage melanoma patients harbouring BRAF mutations. Here the authors track the responses of single melanoma cells to BRAF inhibitors and show that a subset of cells rapidly escapes drug via non-genetic mechanisms and incurs DNA damage.

## Linked entities

- **Genes:** BRAF (B-Raf proto-oncogene, serine/threonine kinase) [NCBI Gene 673], ATF4 (activating transcription factor 4) [NCBI Gene 468]
- **Diseases:** melanoma (MONDO:0005105)

## Full-text entities

- **Genes:** CDC42EP1 (CDC42 effector protein 1) [NCBI Gene 11135] {aka BORG5, CEP1, MSE55}, NGFR (nerve growth factor receptor) [NCBI Gene 4804] {aka CD271, Gp80-LNGFR, TNFRSF16, p75(NTR), p75NTR}, SLC7A5 (solute carrier family 7 member 5) [NCBI Gene 8140] {aka 4F2LC, CD98, D16S469E, E16, LAT1, MPE16}, MCM2 (minichromosome maintenance complex component 2) [NCBI Gene 4171] {aka BM28, CCNL1, CDCL1, D3S3194, DFNA70, MITOTIN}, ZHX2 (zinc fingers and homeoboxes 2) [NCBI Gene 22882] {aka AFR1, RAF}, EGFR (epidermal growth factor receptor) [NCBI Gene 1956] {aka ERBB, ERBB1, ERRP, HER1, NISBD2, NNCIS}, AXL (AXL receptor tyrosine kinase) [NCBI Gene 558] {aka ARK, AXL3, JTK11, Tyro7, UFO}, TUBB2A (tubulin beta 2A class IIa) [NCBI Gene 7280] {aka CDCBM5, TUBB, TUBB2}, FOSL1 (FOS like 1, AP-1 transcription factor subunit) [NCBI Gene 8061] {aka FRA, FRA1, fra-1}, SOX10 (SRY-box transcription factor 10) [NCBI Gene 6663] {aka DOM, PCWH, SOX-10, WS2E, WS4, WS4C}, GEM (GTP binding protein overexpressed in skeletal muscle) [NCBI Gene 2669] {aka KIR}, RB1 (RB transcriptional corepressor 1) [NCBI Gene 5925] {aka OSRC, PPP1R130, RB, p105-Rb, p110-RB1, pRb}, TMSB4X (thymosin beta 4 X-linked) [NCBI Gene 7114] {aka FX, PTMB4, TB4X, TMSB4}, CDK2 (cyclin dependent kinase 2) [NCBI Gene 1017] {aka CDKN2, p33(CDK2)}, HELB (DNA helicase B) [NCBI Gene 92797] {aka DHB, hDHB}, CCNB1 (cyclin B1) [NCBI Gene 891] {aka CCNB}, ETS1 (ETS proto-oncogene 1, transcription factor) [NCBI Gene 2113] {aka ETS-1, EWSR2, c-ets-1, p54}, H2BC21 (H2B clustered histone 21) [NCBI Gene 8349] {aka GL105, H2B, H2B-GL105, H2B.1, H2BE, H2BFQ}, SLC3A2 (solute carrier family 3 member 2) [NCBI Gene 6520] {aka 4F2, 4F2HC, 4T2HC, CD98, CD98HC, MDU1}, ATF4 (activating transcription factor 4) [NCBI Gene 468] {aka CREB-2, CREB2, TAXREB67, TXREB}, MITF (melanocyte inducing transcription factor) [NCBI Gene 4286] {aka CMM8, COMMAD, MI, MITF-A, WS2, WS2A}, MAP2K7 (mitogen-activated protein kinase kinase 7) [NCBI Gene 5609] {aka JNKK2, MAPKK7, MEK, MEK 7, MKK7, PRKMK7}, BRAF (B-Raf proto-oncogene, serine/threonine kinase) [NCBI Gene 673] {aka B-RAF1, B-raf, BRAF-1, BRAF1, NS7, RAFB1}, MYC (MYC proto-oncogene, bHLH transcription factor) [NCBI Gene 4609] {aka MRTL, MYCC, bHLHe39, c-Myc}, EPHB2 (EPH receptor B2) [NCBI Gene 2048] {aka BDPLT22, CAPB, DRT, EK5, EPHT3, ERK}, TP53 (tumor protein p53) [NCBI Gene 7157] {aka BCC7, BMFS5, LFS1, P53, TRP53}, CCNA2 (cyclin A2) [NCBI Gene 890] {aka CCN1, CCNA}, LINC01133 (long intergenic non-protein coding RNA 1133) [NCBI Gene 100505633], FANCD2 (FA complementation group D2) [NCBI Gene 2177] {aka FA-D2, FA4, FACD, FAD, FAD2, FANCD}, GMNN (geminin DNA replication inhibitor) [NCBI Gene 51053] {aka Gem, MGORS6}, RAB32 (RAB32, member RAS oncogene family) [NCBI Gene 10981] {aka PARK26}, PTPN11 (protein tyrosine phosphatase non-receptor type 11) [NCBI Gene 5781] {aka BPTP3, CFC, JMML, METCDS, NS1, PTP-1D}, ACTB (actin beta) [NCBI Gene 60] {aka BKRNS, BNS, BRWS1, CSMH, DDS1, PS1TP5BP1}
- **Diseases:** Cancer (MESH:D009369), Melanoma (MESH:D008545), SKCM (MESH:C562393)
- **Species:** Homo sapiens (human, species) [taxon 9606], Mus musculus (house mouse, species) [taxon 10090]
- **Mutations:** BRAFV600K, Val600
- **Cell lines:** MB3883 — Homo sapiens (Human), Finite cell line (CVCL_X112), CRL-1619 — Homo sapiens (Human), Inosine triphosphatase deficiency, Transformed cell line (CVCL_IN47), A375 — Homo sapiens (Human), Amelanotic melanoma, Cancer cell line (CVCL_0132), WM278 — Homo sapiens (Human), Cutaneous melanoma, Cancer cell line (CVCL_6473), SKMEL19 — Homo sapiens (Human), Cutaneous melanoma, Cancer cell line (CVCL_6025), SKMEL267C — Homo sapiens (Human), Melanoma, Cancer cell line (CVCL_6134), WM164 — Homo sapiens (Human), Cutaneous melanoma, Cancer cell line (CVCL_7928), MB4562 — Homo sapiens (Human), Retinitis pigmentosa, Transformed cell line (CVCL_AK96), SKMEL28 — Homo sapiens (Human), Cutaneous melanoma, Cancer cell line (CVCL_0526)

## Full text

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## Figures

8 figures with captions in the complete paper: https://tomesphere.com/paper/PMC7979728/full.md

## References

70 references — full list in the complete paper: https://tomesphere.com/paper/PMC7979728/full.md

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Source: https://tomesphere.com/paper/PMC7979728