# Minimal genome-wide human CRISPR-Cas9 library

**Authors:** Emanuel Gonçalves, Mark Thomas, Fiona M. Behan, Gabriele Picco, Clare Pacini, Felicity Allen, Alessandro Vinceti, Mamta Sharma, David A. Jackson, Stacey Price, Charlotte M. Beaver, Oliver Dovey, David Parry-Smith, Francesco Iorio, Leopold Parts, Kosuke Yusa, Mathew J. Garnett

PMC · DOI: 10.1186/s13059-021-02268-4 · Genome Biology · 2021-01-21

## TL;DR

Researchers created a smaller, more efficient CRISPR-Cas9 library that still works well for genetic studies.

## Contribution

A new minimal CRISPR-Cas9 library is introduced, significantly smaller yet effective for genome-wide studies.

## Key findings

- MinLibCas9 reduces library size by over 42% without losing sensitivity or specificity.
- The library maintains compatibility with existing datasets and improves dynamic range in CRISPR screens.

## Abstract

CRISPR guide RNA libraries have been iteratively improved to provide increasingly efficient reagents, although their large size is a barrier for many applications. We design an optimised minimal genome-wide human CRISPR-Cas9 library (MinLibCas9) by mining existing large-scale gene loss-of-function datasets, resulting in a greater than 42% reduction in size compared to other CRISPR-Cas9 libraries while preserving assay sensitivity and specificity. MinLibCas9 provides backward compatibility with existing datasets, increases the dynamic range of CRISPR-Cas9 screens and extends their application to complex models and assays.

The online version contains supplementary material available at 10.1186/s13059-021-02268-4.

## Full-text entities

- **Genes:** RNF112 (ring finger protein 112) [NCBI Gene 7732] {aka BFP, ZNF179}, EEF1A2 (eukaryotic translation elongation factor 1 alpha 2) [NCBI Gene 1917] {aka DEE33, EEF1AL, EF-1-alpha-2, EF1A, EIEE33, HS1}, MAPK12 (mitogen-activated protein kinase 12) [NCBI Gene 6300] {aka ERK-6, ERK3, ERK6, MAPK 12, P38GAMMA, PRKM12}, BRAF (B-Raf proto-oncogene, serine/threonine kinase) [NCBI Gene 673] {aka B-RAF1, B-raf, BRAF-1, BRAF1, NS7, RAFB1}, MYC (MYC proto-oncogene, bHLH transcription factor) [NCBI Gene 4609] {aka MRTL, MYCC, bHLHe39, c-Myc}
- **Diseases:** cancer (MESH:D009369), colorectal cancer (MESH:D015179)
- **Chemicals:** Poly-T (MESH:D011071), Blasticidin (MESH:C004500), oligonucleotide (MESH:D009841), carbenicillin (MESH:D002228), puromycin (MESH:D011691), DMSO (MESH:D004121), T (MESH:D014316), Lipofectamine LTX (-), ethanol (MESH:D000431), dabrafenib (MESH:C561627), polybrene (MESH:D006583)
- **Species:** Homo sapiens (human, species) [taxon 9606], Escherichia coli (E. coli, species) [taxon 562], Macrostomum axi (species) [taxon 2614289]
- **Mutations:** V600E
- **Cell lines:** KM-12 — Homo sapiens (Human), Colon carcinoma, Cancer cell line (CVCL_1331), S2 — Drosophila melanogaster (Fruit fly), Spontaneously immortalized cell line (CVCL_Z232), HT-29 — Homo sapiens (Human), Colon adenocarcinoma, Cancer cell line (CVCL_0320), HEK293 — Homo sapiens (Human), Transformed cell line (CVCL_0045), pKLV1 — Mus musculus (Mouse), Hybridoma (CVCL_C7RB), CAM277 — Cromileptes altivelis (Humpback grouper), Spontaneously immortalized cell line (CVCL_ZV35), MinLibCas9 — Homo sapiens (Human), Induced pluripotent stem cell (CVCL_RG56)

## Full text

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## Figures

2 figures with captions in the complete paper: https://tomesphere.com/paper/PMC7818936/full.md

## References

52 references — full list in the complete paper: https://tomesphere.com/paper/PMC7818936/full.md

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Source: https://tomesphere.com/paper/PMC7818936