# Biomarkers for Heart Failure Prognosis: Proteins, Genetic Scores and Non-coding RNAs

**Authors:** Apurva Shrivastava, Tina Haase, Tanja Zeller, Christian Schulte

PMC · DOI: 10.3389/fcvm.2020.601364 · Frontiers in Cardiovascular Medicine · 2020-11-23

## TL;DR

This paper reviews the use of proteins, genetic scores, and non-coding RNAs as biomarkers for predicting heart failure outcomes.

## Contribution

The paper evaluates the potential of non-coding RNAs and genetic risk scores as novel biomarkers for heart failure prognosis.

## Key findings

- Proteins are widely used biomarkers for heart failure but may not always be cardiac-specific.
- Non-coding RNAs show promise as novel biomarkers due to their unique characteristics.
- Genetic risk scores could enhance disease risk estimation, though their application is still in early stages.

## Abstract

Heart failure (HF) is a complex disease in which cardiomyocyte injury leads to a cascade of inflammatory and fibrosis pathway activation, thereby causing decrease in cardiac function. As a result, several biomolecules are released which can be identified easily in circulating body fluids. The complex biological processes involved in the development and worsening of HF require an early treatment strategy to stop deterioration of cardiac function. Circulating biomarkers provide not only an ideal platform to detect subclinical changes, their clinical application also offers the opportunity to monitor disease treatment. Many of these biomarkers can be quantified with high sensitivity; allowing their clinical application to be evaluated beyond diagnostic purposes as potential tools for HF prognosis. Though the field of biomarkers is dominated by protein molecules, non-coding RNAs (microRNAs, long non-coding RNAs, and circular RNAs) are novel and promising biomarker candidates that encompass several ideal characteristics required in the biomarker field. The application of genetic biomarkers as genetic risk scores in disease prognosis, albeit in its infancy, holds promise to improve disease risk estimation. Despite the multitude of biomarkers that have been available and identified, the majority of novel biomarker candidates are not cardiac-specific, and instead may simply be a readout of systemic inflammation or other pathological processes. Thus, the true value of novel biomarker candidates in HF prognostication remains unclear. In this article, we discuss the current state of application of protein, genetic as well as non-coding RNA biomarkers in HF risk prognosis.

## Linked entities

- **Diseases:** heart failure (MONDO:0005252)

## Full-text entities

- **Genes:** TNNT2 (troponin T2, cardiac type) [NCBI Gene 7139] {aka CMD1D, CMH2, CMPD2, LVNC6, RCM3, TnTC}, NPR1 (natriuretic peptide receptor 1) [NCBI Gene 4881] {aka ANP-A, ANPRA, ANPa, GC-A, GUC2A, GUCY2A}, S100A9 (S100 calcium binding protein A9) [NCBI Gene 6280] {aka 60B8AG, CAGB, CFAG, CGLB, L1AG, LIAG}, AGT (angiotensinogen) [NCBI Gene 183] {aka ANHU, SERPINA8, hFLT1}, Bag3 (BCL2-associated athanogene 3) [NCBI Gene 29810] {aka Bis, mg638}, NPPA (natriuretic peptide A) [NCBI Gene 4878] {aka ANF, ANP, ATFB6, ATRST2, CDD, CDD-ANF}, Tnnt2 (troponin T2, cardiac) [NCBI Gene 21956] {aka Tnt, cTnT}, MYBPC3 (myosin binding protein C3) [NCBI Gene 4607] {aka CMD1MM, CMH4, FHC, LVNC10, MYBP-C, cMyBP-C}, IL1RL1 (interleukin 1 receptor like 1) [NCBI Gene 9173] {aka DER4, FIT-1, IL33R, ST2, ST2L, ST2V}, NPR3 (natriuretic peptide receptor 3) [NCBI Gene 4883] {aka ANP-C, ANPR-C, ANPRC, BOMOS, C5orf23, GUCY2B}, LEP (leptin) [NCBI Gene 3952] {aka LEPD, OB, OBS}, PPIF (peptidylprolyl isomerase F) [NCBI Gene 10105] {aka CYP3, CyP-M, Cyp-D, CypD}, GDF15 (growth differentiation factor 15) [NCBI Gene 9518] {aka GDF-15, HG, MIC-1, MIC1, NAG-1, PDF}, TNNC2 (troponin C2, fast skeletal type) [NCBI Gene 7125] {aka CFAP85, CMYO15, CMYP15, FAP85, MYONRI}, NPPB (natriuretic peptide B) [NCBI Gene 4879] {aka BNP, Iso-ANP}, Tnf (tumor necrosis factor) [NCBI Gene 21926] {aka DIF, TNF-a, TNF-alpha, TNFSF2, TNFalpha, Tnfa}, MEF2A (myocyte enhancer factor 2A) [NCBI Gene 4205] {aka ADCAD1, RSRFC4, RSRFC9, mef2}, XPO5 (exportin 5) [NCBI Gene 57510] {aka exp5}, DICER1 (dicer 1, ribonuclease III) [NCBI Gene 23405] {aka DCR1, Dicer, Dicer1e, GLOW, HERNA, K12H4.8-LIKE}, APOB (apolipoprotein B) [NCBI Gene 338] {aka FCHL2, FLDB, LDLCQ4, apoB-100, apoB-48}, Shtn1 (shootin 1) [NCBI Gene 71653] {aka 4930506M07Rik, Shootin1, mKIAA1598}, RARRES2 (retinoic acid receptor responder 2) [NCBI Gene 5919] {aka HP10433, TIG2}, CDKN2B-AS1 (CDKN2B and CDKN2A antisense cis and trans regulatory RNA 1) [NCBI Gene 100048912] {aka 66CTG, ANRIL, CDKN2B-AS, CDKN2BAS, NCRNA00089, PCAT12}, RARA (retinoic acid receptor alpha) [NCBI Gene 5914] {aka NR1B1, RAR, RARalpha}, GFI1 (growth factor independent 1 transcriptional repressor) [NCBI Gene 2672] {aka GFI-1, GFI1A, SCN2, ZNF163}, DNAH8 (dynein axonemal heavy chain 8) [NCBI Gene 1769] {aka ATPase, SPGF46, hdhc9}, IL33 (interleukin 33) [NCBI Gene 90865] {aka C9orf26, DVS27, IL1F11, NF-HEV, NFEHEV}, FSD1L (fibronectin type III and SPRY domain containing 1 like) [NCBI Gene 83856] {aka CCDC10, CSDUFD1, FSD1CL, FSD1NL, MIR1}, LGALS3 (galectin 3) [NCBI Gene 3958] {aka CBP35, GAL3, GALBP, GALIG, L31, LGALS2}, Hspb7 (heat shock protein family B (small) member 7) [NCBI Gene 29818] {aka 27kDa, Hsp25-2, cvHsp}, Il10 (interleukin 10) [NCBI Gene 16153] {aka CSIF, If2a, Il-10}, TNNT1 (troponin T1, slow skeletal type) [NCBI Gene 7138] {aka ANM, NEM5, STNT, TNT, TNTS}, TBC1D9B (TBC1 domain family member 9B) [NCBI Gene 23061] {aka GRAMD9B}, DGCR8 (DGCR8 microprocessor complex subunit) [NCBI Gene 54487] {aka C22orf12, DGCRK6, Gy1, pasha}, SERPINA1 (serpin family A member 1) [NCBI Gene 5265] {aka A1A, A1AT, AAT, PI, PI1, PRO2275}, FABP3 (fatty acid binding protein 3) [NCBI Gene 2170] {aka FABP11, H-FABP, M-FABP, MDGI, O-FABP}, TNNC1 (troponin C1, slow skeletal and cardiac type) [NCBI Gene 7134] {aka CMD1Z, CMH13, TN-C, TNC, TNNC}, FSD1 (fibronectin type III and SPRY domain containing 1) [NCBI Gene 79187] {aka GLFND, MIR1}, GPR15 (G protein-coupled receptor 15) [NCBI Gene 2838] {aka BOB}, Calm2 (calmodulin 2) [NCBI Gene 12314] {aka 1500001E21Rik, Cam2, CamC}, Usp3 (ubiquitin specific peptidase 3) [NCBI Gene 235441], CTNS (cystinosin, lysosomal cystine transporter) [NCBI Gene 1497] {aka CTNS-LSB, PQLC4, SLC66A4}, ST2 (suppression of tumorigenicity 2) [NCBI Gene 6761], TNNI3 (troponin I3, cardiac type) [NCBI Gene 7137] {aka CMD1FF, CMD2A, CMH7, RCM1, TNNC1, cTnI}, H19 (H19 imprinted maternally expressed transcript) [NCBI Gene 283120] {aka ASM, ASM1, BWS, D11S813E, GMRSP, LINC00008}, REN (renin) [NCBI Gene 5972] {aka ADTKD4, HNFJ2, RTD}, CRP (C-reactive protein) [NCBI Gene 1401] {aka PTX1}, CLEC3B (C-type lectin domain family 3 member B) [NCBI Gene 7123] {aka MCDR4, TN, TNA}, Lrig3 (leucine-rich repeats and immunoglobulin-like domains 3) [NCBI Gene 320398] {aka 9030421L11Rik, 9130004I02Rik, 9430095K15Rik, mKIAA3016}, AHRR (aryl hydrocarbon receptor repressor) [NCBI Gene 57491] {aka AHH, AHHR, bHLHe77}, MME (membrane metalloendopeptidase) [NCBI Gene 4311] {aka CALLA, CD10, CMT2T, NEP, SCA43, SFE}, NPR2 (natriuretic peptide receptor 2) [NCBI Gene 4882] {aka AMDM, ANPRB, ANPb, ECDM, GC-B, GCB}, Ttn (titin) [NCBI Gene 22138] {aka 1100001C23Rik, 2310036G12Rik, 2310057K23Rik, 2310074I15Rik, D330041I19Rik, D830007G01Rik}, TNC (tenascin C) [NCBI Gene 3371] {aka 150-225, DFNA56, GMEM, GP, HXB, JI}, BCL3 (BCL3 transcription coactivator) [NCBI Gene 602] {aka BCL4, D19S37}, PCSK9 (proprotein convertase subtilisin/kexin type 9) [NCBI Gene 255738] {aka FH3, FHCL3, HCHOLA3, LDLCQ1, NARC-1, NARC1}, CS (citrate synthase) [NCBI Gene 1431], DROSHA (drosha ribonuclease III) [NCBI Gene 29102] {aka ETOHI2, HSA242976, RANSE3L, RN3, RNASE3L, RNASEN}, HCK (HCK proto-oncogene, Src family tyrosine kinase) [NCBI Gene 3055] {aka AIPCV, JTK9, p59Hck, p61Hck}, LDLR (low density lipoprotein receptor) [NCBI Gene 3949] {aka LDLCQ2}
- **Diseases:** ischemic cardiomyopathy (MESH:D009202), structural and functional abnormalities of the heart (MESH:D006330), Reduced cardiac output (MESH:D002303), fibrosis (MESH:D005355), metabolic disorders (MESH:D008659), cancers (MESH:D009369), CArdiac Remodeling (MESH:D020257), aortic stenosis (MESH:D001024), Diabetes (MESH:D003920), reduction in EF (MESH:D015431), cardiac strain (MESH:D013180), renal hospitalization (MESH:D003428), ACS (MESH:D054058), cardiomyocyte membrane injury (MESH:D015433), breast cancer (MESH:D001943), dyspnea (MESH:D004417), HFpEF (MESH:D054144), post-MI (MESH:D000094025), myofibrillar injury (MESH:C580316), VA (MESH:D001145), cardiac inflammation (MESH:D007249), ischemic (MESH:D002545), metastasis (MESH:D009362), HF (MESH:D006333), hypertrophy (MESH:D006984), Tumorigenicity (MESH:D002471), stroke (MESH:D020521), HCM (MESH:D002312), cardiac damage (MESH:D006331), LV function (MESH:D018487), ischemia (MESH:D007511), cardiac hypertrophy (MESH:D006332), CVD (MESH:D002318), overload (MESH:D019190), atrial fibrillation (MESH:D001281), CV death (MESH:D003643), hypertension (MESH:D006973), atherosclerotic plaques (MESH:D058226), myocardial infarction (MESH:D009203), cardiomyocyte injury (MESH:D014947), blood coagulation (MESH:D001778), systolic HF (MESH:D054143), myocardium (MESH:D017682), dilated cardiomyopathy (MESH:D002311), cardiomyocyte damage (MESH:D020263), CAD (MESH:D003324), obesity (MESH:D009765), acute (MESH:D000208), ischemic injury (MESH:D017202), failing heart (MESH:D055111)
- **Species:** Homo sapiens (human, species) [taxon 9606], Sus scrofa (pig, species) [taxon 9823], Mus musculus (house mouse, species) [taxon 10090]
- **Mutations:** AUC of 0, rs3729825, AUC of 0, rs3729829, rs12564445, rs7140721

## Full text

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## Figures

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## References

228 references — full list in the complete paper: https://tomesphere.com/paper/PMC7719677/full.md

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Source: https://tomesphere.com/paper/PMC7719677