# Distinct Age-Related Epigenetic Signatures in CD4 and CD8 T Cells

**Authors:** Bin Hu, Rohit R. Jadhav, Claire E. Gustafson, Sabine Le Saux, Zhongde Ye, Xuanying Li, Lu Tian, Cornelia M. Weyand, Jörg J. Goronzy

PMC · DOI: 10.3389/fimmu.2020.585168 · 2020-11-11

## TL;DR

This study finds that CD4 T cells are more resistant to aging than CD8 T cells due to differences in epigenetic changes.

## Contribution

The paper identifies distinct age-related epigenetic signatures in CD4 and CD8 T cells that explain their differing resilience to aging.

## Key findings

- CD8 T cells show stronger age-related differentiation signatures compared to CD4 T cells.
- Old CD8 T cells have reduced chromatin accessibility for genes related to basic cell functions.
- Lower YY1 and NRF1 expression may contribute to the epigenetic changes in CD8 T cells.

## Abstract

Healthy immune aging is in part determined by how well the sizes of naïve T cell compartments are being maintained with advancing age. Throughout adult life, replenishment largely derives from homeostatic proliferation of existing naïve and memory T cell populations. However, while the subpopulation composition of CD4 T cells is relatively stable, the CD8 T cell compartment undergoes more drastic changes with loss of naïve CD8 T cells and accumulation of effector T cells, suggesting that CD4 T cells are more resilient to resist age-associated changes. To determine the epigenetic basis for these differences in behaviors, we compared chromatin accessibility maps of CD4 and CD8 T cell subsets from young and old individuals and related the results to the expressed transcriptome. The dominant age-associated signatures resembled hallmarks of differentiation, which were more pronounced for CD8 naïve and memory than the corresponding CD4 T cell subsets, indicating that CD8 T cells are less able to keep cellular quiescence upon homeostatic proliferation. In parallel, CD8 T cells from old adults, irrespective of their differentiation state, displayed greater reduced accessibility to genes of basic cell biological function, including genes encoding ribosomal proteins. One possible mechanism is the reduced expression of the transcription factors YY1 and NRF1. Our data suggest that chromatin accessibility signatures can be identified that distinguish CD4 and CD8 T cells from old adults and that may confer the higher resilience of CD4 T cells to aging.

## Linked entities

- **Genes:** YY1 (YY1 transcription factor) [NCBI Gene 7528], NRF1 (nuclear respiratory factor 1) [NCBI Gene 4899]

## Full-text entities

- **Genes:** Cd4 (CD4 antigen) [NCBI Gene 12504] {aka L3T4, Ly-4}, POTEF (POTE ankyrin domain family member F) [NCBI Gene 728378] {aka A26C1B, POTE2alpha, POTEACTIN}, CCR7 (C-C motif chemokine receptor 7) [NCBI Gene 1236] {aka BLR2, CC-CKR-7, CCR-7, CD197, CDw197, CMKBR7}, MARCKSL1 (MARCKS like 1) [NCBI Gene 65108] {aka F52, MACMARCKS, MLP, MLP1, MRP}, F3 (coagulation factor III, tissue factor) [NCBI Gene 2152] {aka CD142, TF, TFA}, HNF4A (hepatocyte nuclear factor 4 alpha) [NCBI Gene 3172] {aka FRTS4, HNF4, HNF4a7, HNF4a8, HNF4a9, HNF4alpha}, Il7 (interleukin 7) [NCBI Gene 16196] {aka A630026I06Rik, Il-7, hlb368}, Batf (basic leucine zipper transcription factor, ATF-like) [NCBI Gene 53314] {aka B-ATF, SFA-2}, SELL (selectin L) [NCBI Gene 6402] {aka CD62L, LAM1, LECAM1, LEU8, LNHR, LSEL}, ELK1 (ETS transcription factor ELK1) [NCBI Gene 2002], IRF4 (interferon regulatory factor 4) [NCBI Gene 3662] {aka IMD131, LSIRF, MUM1, NF-EM5, SHEP8}, ETS1 (ETS proto-oncogene 1, transcription factor) [NCBI Gene 2113] {aka ETS-1, EWSR2, c-ets-1, p54}, YY1 (YY1 transcription factor) [NCBI Gene 7528] {aka DELTA, GADEVS, INO80S, NF-E1, UCRBP, YIN-YANG-1}, RUNX2 (RUNX family transcription factor 2) [NCBI Gene 860] {aka AML3, CBF-alpha-1, CBFA1, CCD, CCD1, CLCD}, PC (pyruvate carboxylase) [NCBI Gene 5091] {aka PCB}, Il15 (interleukin 15) [NCBI Gene 16168] {aka IL-15}, Tbx21 (T-box 21) [NCBI Gene 57765] {aka TBT1, Tbet, Tblym}, Il7r (interleukin 7 receptor) [NCBI Gene 16197] {aka CD127, IL-7Ralpha}, MRPS7 (mitochondrial ribosomal protein S7) [NCBI Gene 51081] {aka COXPD34, MRP-S, MRP-S7, RP-S7, RPMS7, S7mt}, TRBV20OR9-2 (T cell receptor beta variable 20/OR9-2 (non-functional)) [NCBI Gene 6962] {aka CDR3, TCRBV20S2, TCRBV2O, TCRBV2S2O}, PTPRC (protein tyrosine phosphatase receptor type C) [NCBI Gene 5788] {aka B220, CD45, CD45R, GP180, IMD105, L-CA}, Eomes (eomesodermin) [NCBI Gene 13813] {aka TBR-2, Tbr2}, ENPP1 (ectonucleotide pyrophosphatase/phosphodiesterase 1) [NCBI Gene 5167] {aka ARHR2, COLED, M6S1, NPP1, NPPS, PC-1}, HGF (hepatocyte growth factor) [NCBI Gene 3082] {aka DFNB39, F-TCF, HGFB, HPTA, SF}, CD4 (CD4 molecule) [NCBI Gene 920] {aka CD4mut, IMD79, Leu-3, OKT4D, T4}, SIRT7 (sirtuin 7) [NCBI Gene 51547] {aka SIR2L7}, JUNB (JunB proto-oncogene, AP-1 transcription factor subunit) [NCBI Gene 3726] {aka AP-1}, CD8A (CD8 subunit alpha) [NCBI Gene 925] {aka CD8, CD8alpha, IMD116, Leu2, p32}, GATA3 (GATA binding protein 3) [NCBI Gene 2625] {aka HDR, HDRS}, CD28 (CD28 molecule) [NCBI Gene 940] {aka IMD123, Tp44}, Trav6-3 (T cell receptor alpha variable 6-3) [NCBI Gene 328483] {aka Gm13948, Gm193, Gm4, TCR}, DNER (delta/notch like EGF repeat containing) [NCBI Gene 92737] {aka UNQ26, bet}, VTC1 (Vtc1p) [NCBI Gene 856803] {aka NRF1, PHM4}, CBX8 (chromobox 8) [NCBI Gene 57332] {aka PC3, RC1}, ZBTB7B (zinc finger and BTB domain containing 7B) [NCBI Gene 51043] {aka CKROX, THPOK, ZBTB15, ZFP-67, ZFP67, ZNF857B}, NRF1 (nuclear respiratory factor 1) [NCBI Gene 4899] {aka ALPHA-PAL}, ZBTB12 (zinc finger and BTB domain containing 12) [NCBI Gene 221527] {aka Bat9, C6orf46, D6S59E, G10, NG35}, CBX4 (chromobox 4) [NCBI Gene 8535] {aka NBP16, PC2}, RUNX1 (RUNX family transcription factor 1) [NCBI Gene 861] {aka AML1, AML1-EVI-1, AMLCR1, CBF2alpha, CBFA2, EVI-1}
- **Diseases:** infectious diseases (MESH:D003141), EM (MESH:C000722498), influenza infection (MESH:D007251), autoimmune (MESH:D001327), lymphopenia (MESH:D008231), inflammation (MESH:D007249), CM (MESH:D008569), mitochondrial dysfunction (MESH:D028361), COVID-19 (MESH:D000086382), malignant disease (MESH:D009369)
- **Species:** Saccharomyces cerevisiae (baker's yeast, species) [taxon 4932], Severe acute respiratory syndrome coronavirus 2 (no rank) [taxon 2697049], Homo sapiens (human, species) [taxon 9606], Mus musculus (house mouse, species) [taxon 10090], Diptera (flies, order) [taxon 7147]

## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC7686576/full.md

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Source: https://tomesphere.com/paper/PMC7686576