# Enhancer remodeling promotes tumor-initiating activity in NRF2-activated non-small cell lung cancers

**Authors:** Keito Okazaki, Hayato Anzawa, Zun Liu, Nao Ota, Hiroshi Kitamura, Yoshiaki Onodera, Md. Morshedul Alam, Daisuke Matsumaru, Takuma Suzuki, Fumiki Katsuoka, Shu Tadaka, Ikuko Motoike, Mika Watanabe, Kazuki Hayasaka, Akira Sakurada, Yoshinori Okada, Masayuki Yamamoto, Takashi Suzuki, Kengo Kinoshita, Hiroki Sekine, Hozumi Motohashi

PMC · DOI: 10.1038/s41467-020-19593-0 · 2020-11-20

## TL;DR

This study shows how abnormal NRF2 activity in lung cancer cells leads to aggressive tumor growth by changing gene regulation.

## Contribution

The study reveals a new mechanism where NRF2 and CEBPB work together to create enhancers that promote tumor-initiating activity in lung cancer.

## Key findings

- Persistent NRF2 activation creates enhancers at specific gene loci in non-small cell lung cancers.
- The CEBPB protein is essential for forming these enhancers, particularly the NOTCH3 enhancer.
- The NRF2-CEBPB interaction promotes tumor-initiating activity and cancer malignancy.

## Abstract

Transcriptional dysregulation, which can be caused by genetic and epigenetic alterations, is a fundamental feature of many cancers. A key cytoprotective transcriptional activator, NRF2, is often aberrantly activated in non-small cell lung cancers (NSCLCs) and supports both aggressive tumorigenesis and therapeutic resistance. Herein, we find that persistently activated NRF2 in NSCLCs generates enhancers at gene loci that are not normally regulated by transiently activated NRF2 under physiological conditions. Elevated accumulation of CEBPB in NRF2-activated NSCLCs is found to be one of the prerequisites for establishment of the unique NRF2-dependent enhancers, among which the NOTCH3 enhancer is shown to be critical for promotion of tumor-initiating activity. Enhancer remodeling mediated by NRF2-CEBPB cooperativity promotes tumor-initiating activity and drives malignancy of NRF2-activated NSCLCs via establishment of the NRF2-NOTCH3 regulatory axis.

Aberrant activation of NRF2 in cancer cells contributes to tumorigenicity and therapeutic resistance. Here, the authors show that NRF2 cooperates with CEBPB and remodels enhancers to confer tumor-initiating activity on NRF2- activated non-small cell lung cancers.

## Linked entities

- **Genes:** GABPA (GA binding protein transcription factor subunit alpha) [NCBI Gene 2551], CEBPB (CCAAT enhancer binding protein beta) [NCBI Gene 1051], NOTCH3 (notch receptor 3) [NCBI Gene 4854]

## Full-text entities

- **Genes:** SLC7A11 (solute carrier family 7 member 11) [NCBI Gene 23657] {aka CCBR1, xCT}, KEAP1 (kelch like ECH associated protein 1) [NCBI Gene 9817] {aka INrf2, KLHL19}, PBX3 (PBX homeobox 3) [NCBI Gene 5090], Ptprc (protein tyrosine phosphatase receptor type C) [NCBI Gene 19264] {aka B220, CD45R, Cd45, L-CA, Ly-5, Lyt-4}, HMGA1 (high mobility group AT-hook 1) [NCBI Gene 3159] {aka HMG-R, HMGA1A, HMGIY}, ACTB (actin beta) [NCBI Gene 60] {aka BKRNS, BNS, BRWS1, CSMH, DDS1, PS1TP5BP1}, NQO1 (NAD(P)H quinone dehydrogenase 1) [NCBI Gene 1728] {aka DHQU, DIA4, DTD, NMOR1, NMORI, QR1}, GSTP1 (glutathione S-transferase pi 1) [NCBI Gene 2950] {aka DFN7, FAEES3, GST3, GSTP, GSTP1-1, HEL-S-22}, TXNRD1 (thioredoxin reductase 1) [NCBI Gene 7296] {aka GRIM-12, TR, TR1, TRXR1, TXNR, TXNR1}, Nfe2l2 (nuclear factor, erythroid derived 2, like 2) [NCBI Gene 18024] {aka Nrf2}, Egf (epidermal growth factor) [NCBI Gene 13645], CEBPB (CCAAT enhancer binding protein beta) [NCBI Gene 1051] {aka C/EBP-beta, IL6DBP, NF-IL6, TCF5}, NRG4 (neuregulin 4) [NCBI Gene 145957] {aka HRG4}, ABCA1 (ATP binding cassette subfamily A member 1) [NCBI Gene 19] {aka ABC-1, ABC1, CERP, HDLCQTL13, HDLDT1, HPALP1}, ZC3H12A (zinc finger CCCH-type containing 12A) [NCBI Gene 80149] {aka MCPIP, MCPIP-1, MCPIP1, Reg1, dJ423B22.1}, Fosl2 (fos-like antigen 2) [NCBI Gene 14284] {aka Fra-2}, HJURP (Holliday junction recognition protein) [NCBI Gene 55355] {aka FAKTS, URLC9, hFLEG1}, GCLC (glutamate-cysteine ligase catalytic subunit) [NCBI Gene 2729] {aka CNSHA7, GCL, GCS, GLCL, GLCLC}, CEBPA (CCAAT enhancer binding protein alpha) [NCBI Gene 1050] {aka C/EBP-alpha, CEBP}, F3 (coagulation factor III, tissue factor) [NCBI Gene 2152] {aka CD142, TF, TFA}, NR0B1 (nuclear receptor subfamily 0 group B member 1) [NCBI Gene 190] {aka AHC, AHCH, AHX, DAX-1, DAX1, DSS}, Pecam1 (platelet/endothelial cell adhesion molecule 1) [NCBI Gene 18613] {aka Cd31, PECAM-1, Pecam}, VRK1 (VRK serine/threonine kinase 1) [NCBI Gene 7443] {aka HMNR10, PCH1, PCH1A}, MAFK (MAF bZIP transcription factor K) [NCBI Gene 7975] {aka NFE2U, P18}, C5AR1 (complement C5a receptor 1) [NCBI Gene 728] {aka C5A, C5AR, C5R1, CD88}, GATA3 (GATA binding protein 3) [NCBI Gene 2625] {aka HDR, HDRS}, NOTCH1 (notch receptor 1) [NCBI Gene 4851] {aka AOS5, AOVD1, TAN1, hN1}, NFE2L2 (NFE2 like bZIP transcription factor 2) [NCBI Gene 4780] {aka IMDDHH, NRF2, Nrf-2}, FAM20B (FAM20B glycosaminoglycan xylosylkinase) [NCBI Gene 9917] {aka gxk1}, AKR1C1 (aldo-keto reductase family 1 member C1) [NCBI Gene 1645] {aka 2-ALPHA-HSD, 20-ALPHA-HSD, DD1, DD1/DD2, DDH, DDH1}, Cebpb (CCAAT/enhancer binding protein beta) [NCBI Gene 12608] {aka C/EBPbeta, CRP2, IL-6DBP, LAP, LIP, NF-IL6}, HGD (homogentisate 1,2-dioxygenase) [NCBI Gene 3081] {aka AKU, HGO}, MYC (MYC proto-oncogene, bHLH transcription factor) [NCBI Gene 4609] {aka MRTL, MYCC, bHLHe39, c-Myc}, POTEF (POTE ankyrin domain family member F) [NCBI Gene 728378] {aka A26C1B, POTE2alpha, POTEACTIN}, FOSL2 (FOS like 2, AP-1 transcription factor subunit) [NCBI Gene 2355] {aka ACED, FRA2}, Keap1 (kelch-like ECH-associated protein 1) [NCBI Gene 50868] {aka INRF2, mKIAA0132}, GPI (glucose-6-phosphate isomerase) [NCBI Gene 2821] {aka AMF, CNSHA4, GNPI, NLK, PGI, PHI}, SQSTM1 (sequestosome 1) [NCBI Gene 8878] {aka A170, DMRV, EBIAP, FTDALS3, NADGP, OSIL}, HPDL (4-hydroxyphenylpyruvate dioxygenase like) [NCBI Gene 84842] {aka 4-HPPD-L, GLOXD1, NEDSWMA, SPG83}, NOTCH3 (notch receptor 3) [NCBI Gene 4854] {aka CADASIL, CADASIL1, CARASIL1, CASIL, FPLD1, IMF2}, NOTCH2 (notch receptor 2) [NCBI Gene 4853] {aka AGS2, HJCYS, hN2}, Mr1 (major histocompatibility complex, class I-related) [NCBI Gene 15064] {aka H2ls}, SRPK1 (SRSF protein kinase 1) [NCBI Gene 6732] {aka SFRSK1}, F2RL2 (coagulation factor II thrombin receptor like 2) [NCBI Gene 2151] {aka PAR-3, PAR3}, FGF2 (fibroblast growth factor 2) [NCBI Gene 2247] {aka BFGF, FGF-2, FGFB, HBGF-2}, HPRT1 (hypoxanthine phosphoribosyltransferase 1) [NCBI Gene 3251] {aka HGPRT, HPRT}, BRD4 (bromodomain containing 4) [NCBI Gene 23476] {aka CAP, CDLS6, FSHRG4, HUNK1, HUNKI, MCAP}, Notch3 (notch 3) [NCBI Gene 18131] {aka N3, hpbk}, INS (insulin) [NCBI Gene 3630] {aka IDDM, IDDM1, IDDM2, ILPR, IRDN, MODY10}, GAPDH (glyceraldehyde-3-phosphate dehydrogenase) [NCBI Gene 2597] {aka G3PD, GAPD, HEL-S-162eP}, PFN2 (profilin 2) [NCBI Gene 5217] {aka D3S1319E, PFL}, Nqo1 (NAD(P)H dehydrogenase, quinone 1) [NCBI Gene 18104] {aka Dia4, Dtd, Nmo-1, Nmo1, Nmor1, Ox-1}, MZF1 (myeloid zinc finger 1) [NCBI Gene 7593] {aka MZF-1, MZF1B, ZFP98, ZNF42, ZSCAN6}, EPHX3 (epoxide hydrolase 3) [NCBI Gene 79852] {aka ABHD9, EH3}, NFE2L2 (NFE2 like bZIP transcription factor 2) [NCBI Gene 497024] {aka NRF2}, GATA1 (GATA binding protein 1) [NCBI Gene 2623] {aka CNSHA9, ERYF1, GATA-1, GF-1, GF1, HAEADA}, GCLM (glutamate-cysteine ligase modifier subunit) [NCBI Gene 2730] {aka GLCLR}
- **Diseases:** Cancer (MESH:D009369), NSCLC (MESH:D002289), tumorigenicity (MESH:D002471), LUAD (MESH:D000077192), retroviral infection (MESH:D000071297), LUSC (MESH:D002294), carcinogenesis (MESH:D063646),  (MESH:D008175)
- **Chemicals:** D-011093 (-), 3,3'-diaminobenzidine (MESH:D015100), nitrogen (MESH:D009584), formaldehyde (MESH:D005557), PBS (MESH:D007854), NaCl (MESH:D012965), citric acid (MESH:D019343), DAB (MESH:C000469), diethyl maleate (MESH:C014476), H2O2 (MESH:D006861), glucose (MESH:D005947), DMSO (MESH:D004121), blasticidin (MESH:C004500), KCl (MESH:D011189), tetracycline (MESH:D013752), M-280 (MESH:C043580), PVDF (MESH:C024865), puromycin (MESH:D011691), DEM (MESH:C498810), Laemmli buffer (MESH:C088816), doxycycline (MESH:D004318), SDS (MESH:D012967), NP40 (MESH:C010615), dexamethasone (MESH:D003907), EDTA (MESH:D004492), polyA (MESH:D011061), DTT (MESH:D004229), HCl (MESH:D006851), streptomycin (MESH:D013307), thiols (MESH:D013438), ethanol (MESH:D000431), CO2 (MESH:D002245), hematoxylin (MESH:D006416), SYBR Green (MESH:C098022), MgCl2 (MESH:D015636), biotin (MESH:D001710), trypan blue (MESH:D014343), polybrene (MESH:D006583), NH4Cl (MESH:D000643), penicillin (MESH:D010406), APOLLO (MESH:C062106), Cremophor-EL (MESH:C000515), DMP (MESH:D014494), CDDO-Im (MESH:C472829), sucrose (MESH:D013395), fumarate (MESH:D005650), NaHCO3 (MESH:D017693), paraffin (MESH:D010232),  (MESH:D002273)
- **Species:** Homo sapiens (human, species) [taxon 9606], Adenoviridae (family) [taxon 10508], Lentivirus (genus) [taxon 11646], Mycoplasma (genus) [taxon 2093], Mus musculus (house mouse, species) [taxon 10090]
- **Mutations:** T2A, cysteine) at 25
- **Cell lines:** BALB/cAJcl — Mus musculus (Mouse), Transformed cell line (CVCL_4350), PLAT-A — Homo sapiens (Human), Transformed cell line (CVCL_B490), DeltaN3U H2023 — Homo sapiens (Human), Lung adenocarcinoma, Cancer cell line (CVCL_1515), Balbc — Mus musculus (Mouse), Transformed cell line (CVCL_C0MS), NCIH1944 — Homo sapiens (Human), Lung adenocarcinoma, Cancer cell line (CVCL_1508), 293FT — Homo sapiens (Human), Transformed cell line (CVCL_6911), DeltaN3U — Homo sapiens (Human), Telomerase immortalized cell line (CVCL_A2EM), NCIH1650 — Homo sapiens (Human), Minimally invasive lung adenocarcinoma, Cancer cell line (CVCL_1483), H460 — Homo sapiens (Human), Lung large cell carcinoma, Cancer cell line (CVCL_0459), CORL105 — Homo sapiens (Human), Lung adenocarcinoma, Cancer cell line (CVCL_1138), A549 — Homo sapiens (Human), Lung adenocarcinoma, Cancer cell line (CVCL_0023), HCC4006 — Homo sapiens (Human), Lung adenocarcinoma, Cancer cell line (CVCL_1269), C57BL/6 — Mus musculus (Mouse), Transformed cell line (CVCL_C0MU), H23 — Homo sapiens (Human), Lung adenocarcinoma, Cancer cell line (CVCL_1547)

## Figures

10 figures with captions in the complete paper: https://tomesphere.com/paper/PMC7679411/full.md

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Source: https://tomesphere.com/paper/PMC7679411