# A versatile soluble siglec scaffold for sensitive and quantitative detection of glycan ligands

**Authors:** Emily Rodrigues, Jaesoo Jung, Heajin Park, Caleb Loo, Sepideh Soukhtehzari, Elena N. Kitova, Fahima Mozaneh, Gour Daskhan, Edward N. Schmidt, Vivian Aghanya, Susmita Sarkar, Laura Streith, Chris D. St. Laurent, Linh Nguyen, Jean-Philippe Julien, Lori J. West, Karla C. Williams, John S. Klassen, Matthew S. Macauley

PMC · DOI: 10.1038/s41467-020-18907-6 · Nature Communications · 2020-10-09

## TL;DR

Researchers developed a new method using Siglec-Fc proteins to detect and study glycan ligands on healthy and cancerous cells, revealing important patterns and implications for diseases like Alzheimer's.

## Contribution

A novel Siglec-Fc protein scaffold enables sensitive and quantitative detection of glycan ligands with improved selectivity and applicability.

## Key findings

- Siglec ligand patterns differ between healthy and cancerous cells and tissues.
- CD33 (Siglec-3) recognizes both α2-3 and α2-6 sialosides, linking it to Alzheimer’s disease susceptibility.
- A quantitative mass spectrometry assay was developed to determine Siglec ligand specificities.

## Abstract

Sialic acid-binding immunoglobulin-type lectins (Siglecs) are immunomodulatory receptors that are regulated by their glycan ligands. The connections between Siglecs and human disease motivate improved methods to detect Siglec ligands. Here, we describe a new versatile set of Siglec-Fc proteins for glycan ligand detection. Enhanced sensitivity and selectivity are enabled through multimerization and avoiding Fc receptors, respectively. Using these Siglec-Fc proteins, Siglec ligands are systematically profiled on healthy and cancerous cells and tissues, revealing many unique patterns. Additional features enable the production of small, homogenous Siglec fragments and development of a quantitative ligand-binding mass spectrometry assay. Using this assay, the ligand specificities of several Siglecs are clarified. For CD33 (Siglec-3), we demonstrate that it recognizes both α2-3 and α2-6 sialosides in solution and on cells, which has implications for its link to Alzheimer’s disease susceptibility. These soluble Siglecs reveal the abundance of their glycan ligands on host cells as self-associated molecular patterns.

Sialic acid-binding immunoglobulin-type lectins (Siglecs) are a family of immunomodulatory receptors expressed on cells of the hematopoietic lineage. Here the authors demonstrate an approach for the identification of the glycan ligands of Siglecs, which is also applicable to other families of glycan-binding proteins.

## Linked entities

- **Genes:** CD33 (CD33 molecule) [NCBI Gene 945], CD33 (CD33 molecule) [NCBI Gene 945]
- **Diseases:** Alzheimer’s disease (MONDO:0004975)

## Full-text entities

- **Genes:** CMAS (cytidine monophosphate N-acetylneuraminic acid synthetase) [NCBI Gene 55907] {aka CSS}, CCR3 (C-C motif chemokine receptor 3) [NCBI Gene 1232] {aka C C CKR3, CC-CKR-3, CD193, CKR 3, CKR3, CMKBR3}, SIGLEC1 (sialic acid binding Ig like lectin 1) [NCBI Gene 6614] {aka CD169, SIGLEC-1, SN}, SIGLEC15 (sialic acid binding Ig like lectin 15) [NCBI Gene 284266] {aka CD33L3, HsT1361, SIGLEC-15}, IGKV2-24 (immunoglobulin kappa variable 2-24) [NCBI Gene 28923] {aka A23, IGKV224}, NCAM1 (neural cell adhesion molecule 1) [NCBI Gene 4684] {aka CD56, MSK39, NCAM}, CD8A (CD8 subunit alpha) [NCBI Gene 925] {aka CD8, CD8alpha, IMD116, Leu2, p32}, SIGLEC7 (sialic acid binding Ig like lectin 7) [NCBI Gene 27036] {aka AIRM-1, AIRM1, CD328, CDw328, D-siglec, QA79}, PDCD1 (programmed cell death 1) [NCBI Gene 5133] {aka ADMIO4, AIMTBS, CD279, PD-1, PD1, SLEB2}, CYCS (cytochrome c, somatic) [NCBI Gene 54205] {aka CYC, HCS, THC4}, IGKV6-21 (immunoglobulin kappa variable 6-21 (non-functional)) [NCBI Gene 28906] {aka A26, IGKV621}, CD22 (CD22 molecule) [NCBI Gene 933] {aka SIGLEC-2, SIGLEC2}, SIGLEC12 (sialic acid binding Ig like lectin 12) [NCBI Gene 89858] {aka S2V, SIGLECL1, SLG, Siglec-XII}, SIGLEC8 (sialic acid binding Ig like lectin 8) [NCBI Gene 27181] {aka SAF2, SIGLEC-8, SIGLEC8L}, SIGLEC10 (sialic acid binding Ig like lectin 10) [NCBI Gene 89790] {aka PRO940, SIGLEC-10, SLG2}, SIGLEC9 (sialic acid binding Ig like lectin 9) [NCBI Gene 27180] {aka CD329, CDw329, FOAP-9, OBBP-LIKE, siglec-9}, SIGLEC6 (sialic acid binding Ig like lectin 6) [NCBI Gene 946] {aka CD327, CD33L, CD33L1, CD33L2, CDW327, OBBP1}, ST3 (suppression of tumorigenicity 3) [NCBI Gene 6762] {aka CCTS, TSHL}, Siglec-1 [NCBI Gene 100773687], ST6Gal1 [NCBI Gene 100689389], CD19 (CD19 molecule) [NCBI Gene 930] {aka B4, CVID3}, CST6 (cystatin E/M) [NCBI Gene 1474] {aka ECTD15}, CD22 [NCBI Gene 100752625], LYZ (lysozyme) [NCBI Gene 4069] {aka AMYLD5, LYZF1, LZM}, CD14 (CD14 molecule) [NCBI Gene 929], CD33 [NCBI Gene 100753674], CD33 (CD33 molecule) [NCBI Gene 945] {aka CD33rSiglec, SIGLEC-3, SIGLEC3, p67}, SUMF1 (sulfatase modifying factor 1) [NCBI Gene 285362] {aka AAPA3037, FGE, UNQ3037}, NEB (nebulin) [NCBI Gene 4703] {aka AMC6, NEB177D, NEM2}, SIGLEC16 (sialic acid binding Ig like lectin 16 (gene/pseudogene)) [NCBI Gene 400709] {aka SIGLECP16, Siglec-P16}, FUT4 (fucosyltransferase 4) [NCBI Gene 2526] {aka CD15, ELFT, FCT3A, FUC-TIV, FUTIV, LeX}, NEU1 (neuraminidase 1) [NCBI Gene 4758] {aka NANH, NEU, SIAL1}, ST6GAL1 (ST6 beta-galactoside alpha-2,6-sialyltransferase 1) [NCBI Gene 6480] {aka CDw75, SIAT1, ST6GalI, ST6N}
- **Diseases:** Hypersialylated tumors (MESH:D009369), AD (MESH:D000544), Breast cancer (MESH:D001943), MC (MESH:D018276), IDC (MESH:D044584), ILC (MESH:D018275)
- **Chemicals:** DMF (MESH:D004126), OCT (MESH:C051883), DAB (MESH:C000469), acetic acid (MESH:D019342), CMP-Neu5Ac (MESH:C561601), H2O (MESH:D014867), 3H (MESH:D014316), IPTG (MESH:D007544), CMP-Sialic acid (MESH:D003569), PBS (MESH:D007854), CuSO4 (MESH:D019327), citrate (MESH:D019343), NaCl (MESH:D012965), 2H (MESH:D003903), glycoconjugates (MESH:D006001), polysialic acid (MESH:C021319), fluorescein (MESH:D019793), nitrogen (MESH:D009584), His6 (MESH:C471213), DSPE-PEG-A647 (-), fucose (MESH:D005643), TMA (MESH:C071868), Imidazole (MESH:C029899), SDS (MESH:D012967), D2O (MESH:D017666), GD (MESH:D005682), EDTA (MESH:D004492), ampicillin (MESH:D000667), Lactose (MESH:D007785), L. (MESH:D007930), methanol (MESH:D000432), chloroform (MESH:D002725), ammonium acetate (MESH:C018824), Hygromycin B (MESH:D006921), triethanolamine (MESH:C009546), DMSO (MESH:D004121), paraformaldehyde (MESH:C003043), propidium iodide (MESH:D011419), acetone (MESH:D000096), Sialic acid (MESH:D019158), sodium phosphate (MESH:C018279), FITC (MESH:D016650), MnCl2 (MESH:C025340), CO2 (MESH:D002245), ethanol (MESH:D000431), HEPES (MESH:D006531), DSPC (MESH:C010942), MgCl2 (MESH:D015636), Sephadex G-100 (MESH:C025614), xylene (MESH:D014992), Streptomycin (MESH:D013307), chloramphenicol (MESH:D002701), Tween-20 (MESH:D011136), F12 (MESH:C007782), His (MESH:D006639), trisaccharides (MESH:D014312), DPBS (MESH:C012939), TCEP (MESH:C080938), P2 (MESH:C020845), N-acetylglucosamine (MESH:D000117)
- **Species:** Escherichia coli BL21 (strain) [taxon 511693], Homo sapiens (human, species) [taxon 9606], Tobacco etch virus (no rank) [taxon 12227], Mus musculus (house mouse, species) [taxon 10090], Escherichia coli (E. coli, species) [taxon 562], Felis catus (cat, species) [taxon 9685]
- **Mutations:** P331S, L235A, L234A, P238S, A/G, R124A, R116A, R119A, H268A, R120A, A330S, G237A
- **Cell lines:** K562 — Homo sapiens (Human), Blast phase chronic myelogenous leukemia, BCR-ABL1 positive, Cancer cell line (CVCL_0004), HS-578T — Homo sapiens (Human), Invasive breast carcinoma of no special type, Cancer cell line (CVCL_0332), T47D — Homo sapiens (Human), Invasive breast carcinoma of no special type, Cancer cell line (CVCL_0553), 293 — Homo sapiens (Human), Transformed cell line (CVCL_0045), CHO Lec1 — Cricetulus griseus (Chinese hamster), Spontaneously immortalized cell line (CVCL_3440), CHO — Cricetulus griseus (Chinese hamster), Spontaneously immortalized cell line (CVCL_0213), MCF-7 — Homo sapiens (Human), Invasive breast carcinoma of no special type, Cancer cell line (CVCL_0031), BT549 — Homo sapiens (Human), Invasive breast carcinoma of no special type, Cancer cell line (CVCL_1092), BL-21 — Homo sapiens (Human), EBV-related Burkitt lymphoma, Cancer cell line (CVCL_M639), U937 — Homo sapiens (Human), Adult acute monocytic leukemia, Cancer cell line (CVCL_0007), MDA-MB-231 — Homo sapiens (Human), Breast adenocarcinoma, Cancer cell line (CVCL_0062), HEK293T — Homo sapiens (Human), Transformed cell line (CVCL_0063), ZR-75-1 — Homo sapiens (Human), Invasive breast carcinoma of no special type, Cancer cell line (CVCL_0588), CHO Flp — Cricetulus griseus (Chinese hamster), Spontaneously immortalized cell line (CVCL_U424), MDA-MB-468 — Homo sapiens (Human), Breast adenocarcinoma, Cancer cell line (CVCL_0419), Jurkat — Homo sapiens (Human), Childhood T acute lymphoblastic leukemia, Cancer cell line (CVCL_0065), HuH7 — Homo sapiens (Human), Adult hepatocellular carcinoma, Cancer cell line (CVCL_0336), A549 — Homo sapiens (Human), Lung adenocarcinoma, Cancer cell line (CVCL_0023)

## Full text

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## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC7547722/full.md

## References

50 references — full list in the complete paper: https://tomesphere.com/paper/PMC7547722/full.md

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Source: https://tomesphere.com/paper/PMC7547722