# Genomic and enzymatic evidence of acetogenesis by anaerobic methanotrophic archaea

**Authors:** Shanshan Yang, Yongxin Lv, Xipeng Liu, Yinzhao Wang, Qilian Fan, Zhifeng Yang, Nico Boon, Fengping Wang, Xiang Xiao, Yu Zhang

PMC · DOI: 10.1038/s41467-020-17860-8 · Nature Communications · 2020-08-07

## TL;DR

This study shows that methane can be converted into acetate by archaea in cold seep ecosystems, providing a carbon source for other microbes.

## Contribution

The study provides genomic and enzymatic evidence that ANME-2a archaea can produce acetate during methane oxidation.

## Key findings

- Acetate production is detected alongside AOM activity in a simulated cold seep ecosystem.
- Isotope-labeling confirms methane conversion to acetate by ANME-2a.
- A complete acetogenesis pathway is identified in the ANME-2a genome.

## Abstract

Anaerobic oxidation of methane (AOM) mediated by anaerobic methanotrophic archaea (ANME) is the primary process that provides energy to cold seep ecosystems by converting methane into inorganic carbon. Notably, cold seep ecosystems are dominated by highly divergent heterotrophic microorganisms. The role of the AOM process in supporting heterotrophic population remains unknown. We investigate the acetogenic capacity of ANME-2a in a simulated cold seep ecosystem using high-pressure biotechnology, where both AOM activity and acetate production are detected. The production of acetate from methane is confirmed by isotope-labeling experiments. A complete archaeal acetogenesis pathway is identified in the ANME-2a genome, and apparent acetogenic activity of the key enzymes ADP-forming acetate-CoA ligase and acetyl-CoA synthetase is demonstrated. Here, we propose a modified model of carbon cycling in cold seeps: during AOM process, methane can be converted into organic carbon, such as acetate, which further fuels the heterotrophic community in the ecosystem.

Ocean cold seeps are poorly understood relative to related systems like hydrothermal vents. Here the authors use high pressure bioreactors and microbial communities from a cold seep mud volcano and find a previously missing step of methane conversion to acetate that likely fuels heterotrophic communities.

## Linked entities

- **Proteins:** ACS (acetyl-CoA synthetase)
- **Chemicals:** methane (PubChem CID 297), acetate (PubChem CID 175)

## Full-text entities

- **Genes:** groEL [NCBI Gene 13903475]
- **Diseases:** AOM-SR (MESH:C563094), AOM (MESH:D028361)
- **Chemicals:** sugar (MESH:D000073893), thiol (MESH:D013438), methyl sulfides (MESH:C004784), Na2SO4 (MESH:C012036), AMP (MESH:D000249), ether (MESH:D004986), CO2 (MESH:D002245), Sulfide (MESH:D013440), pyruvate (MESH:D019289), MgCl2 (MESH:D015636), CH3-H4MPT (MESH:C073313), acetate (MESH:D000085), 2-methylpentanoic acid (MESH:C033617), propionic acid (MESH:C029658), NH4Cl (MESH:D000643), thiamine (MESH:D013831), sulfite (MESH:D013447), H2SO4 (MESH:C033158), CH4 (MESH:D008697), methylmalonyl-CoA (MESH:C015357), sulfate (MESH:D013431), HCO3- (MESH:D001639), ADP (MESH:D000244), carbon (MESH:D002244), glycerol (MESH:D005990), sulfur (MESH:D013455), vitamin B12 (MESH:D014805), acetyl-CoA (MESH:D000105), CoA (MESH:D003065), nitrite (MESH:D009573), trace element (MESH:D014131), nitrogen (MESH:D009584), Ni-NTA (-), K3PO4 (MESH:C013216), H2O (MESH:D014867), H2 (MESH:D006859), 13C (MESH:C000615229), ATP (MESH:D000255), NaCl (MESH:D012965), thiosulfate (MESH:D013885), propionate (MESH:D011422), peptides (MESH:D010455), hydrogen sulfide (MESH:D006862), KCl (MESH:D011189), hydrocarbon (MESH:D006838), imidazole (MESH:C029899), methylamines (MESH:D008744), SDS (MESH:D012967), NADH (MESH:D009243), nitrate (MESH:D009566), tetrahydrosarcinapterin (MESH:C071705), methanol (MESH:D000432)
- **Species:** methanogenic archaeon (species) [taxon 1903525], Desulfosarcina (genus) [taxon 2299], Desulfobacula (genus) [taxon 28222], Acidipropionibacterium acidipropionici (species) [taxon 1748], Thermoplasmata (class) [taxon 183967], Methanocaldococcus jannaschii (species) [taxon 2190], Escherichia coli (E. coli, species) [taxon 562], Pyrococcus sp. (species) [taxon 33866], Methanosarcina acetivorans (species) [taxon 2214], Atribacterota (phylum) [taxon 67818], Desulfuromonadales (order) [taxon 69541], Desulfobacteraceae (family) [taxon 213119], Desulfobacterales (order) [taxon 213118], Escherichia coli BL21(DE3) (strain) [taxon 469008], Thermococci (class) [taxon 183968], Methanosarcinales (order) [taxon 94695], Hydrogenophilales (order) [taxon 119069]
- **Cell lines:** -28a — Oryctolagus cuniculus (Rabbit), Transformed cell line (CVCL_6E94), ANME-2 — Homo sapiens (Human), Colon carcinoma, Cancer cell line (CVCL_A628)

## Full text

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## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC7414198/full.md

## References

79 references — full list in the complete paper: https://tomesphere.com/paper/PMC7414198/full.md

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Source: https://tomesphere.com/paper/PMC7414198