# Early‐onset inflammatory bowel disease as a model disease to identify key regulators of immune homeostasis mechanisms

**Authors:** Julia Pazmandi, Artem Kalinichenko, Rico Chandra Ardy, Kaan Boztug

PMC · DOI: 10.1111/imr.12726 · Immunological Reviews · 2018-12-18

## TL;DR

This paper explores how rare, early-onset inflammatory bowel disease can reveal key immune system regulators and help understand complex diseases.

## Contribution

The paper highlights monogenic early-onset IBD as a model to uncover immune homeostasis mechanisms and genetic influences.

## Key findings

- Very early-onset IBD is driven by strong genetic factors and reveals key immune regulators.
- Monogenic IBD models show the connection between gut inflammation and systemic immune dysregulation.
- Comparing adult and early-onset IBD helps understand monogenic versus complex disease mechanisms.

## Abstract

Rare, monogenetic diseases present unique models to dissect gene functions and biological pathways, concomitantly enhancing our understanding of the etiology of complex (and often more common) traits. Although inflammatory bowel disease (IBD) is a generally prototypic complex disease, it can also manifest in an early‐onset, monogenic fashion, often following Mendelian modes of inheritance. Recent advances in genomic technologies have spurred the identification of genetic defects underlying rare, very early‐onset IBD (VEO‐IBD) as a disease subgroup driven by strong genetic influence, pinpointing key players in the delicate homeostasis of the immune system in the gut and illustrating the intimate relationships between bowel inflammation, systemic immune dysregulation, and primary immunodeficiency with increased susceptibility to infections. As for other human diseases, it is likely that adult‐onset diseases may represent complex diseases integrating the effects of host genetic susceptibility and environmental triggers. Comparison of adult‐onset IBD and VEO‐IBD thus provides beautiful models to investigate the relationship between monogenic and multifactorial/polygenic diseases. This review discusses the present and novel findings regarding monogenic IBD as well as key questions and future directions of IBD research.

## Linked entities

- **Diseases:** inflammatory bowel disease (MONDO:0005265), IBD (MONDO:0005265)

## Full-text entities

- **Genes:** IL6 (interleukin 6) [NCBI Gene 3569] {aka BSF-2, BSF2, CDF, HGF, HSF, IFN-beta-2}, PIK3CD (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta) [NCBI Gene 5293] {aka APDS, IMD14, IMD14A, IMD14B, P110DELTA, PI3K}, NFAT5 (nuclear factor of activated T cells 5) [NCBI Gene 10725] {aka NF-AT5, NFATL1, NFATZ, OREBP, TONEBP}, TRNG (tRNA-Gly) [NCBI Gene 4563] {aka MTTG}, IL18 (interleukin 18) [NCBI Gene 3606] {aka IGIF, IL-18, IL-1g, IL1F4}, NFKB1 (nuclear factor kappa B subunit 1) [NCBI Gene 4790] {aka CVID12, EBP-1, KBF1, NF-kB, NF-kB1, NF-kappa-B1}, CYBA (cytochrome b-245 alpha chain) [NCBI Gene 1535] {aka CGD4, p22-PHOX}, HPS6 (HPS6 biogenesis of lysosomal organelles complex 2 subunit 3) [NCBI Gene 79803] {aka BLOC2S3}, CD79A (CD79a molecule) [NCBI Gene 973] {aka IGA, IGAlpha, MB-1, MB1}, LRBA (LPS responsive beige-like anchor protein) [NCBI Gene 987] {aka BGL, CDC4L, CVID8, LAB300, LBA, uc.147}, IL1RN (interleukin 1 receptor antagonist) [NCBI Gene 3557] {aka CRMO2, DIRA, ICIL-1RA, IL-1RN, IL-1ra, IL-1ra3}, NOX1 (NADPH oxidase 1) [NCBI Gene 27035] {aka GP91-2, MOX1, NOH-1, NOH-1L, NOH1}, RIPK2 (receptor interacting serine/threonine kinase 2) [NCBI Gene 8767] {aka CARD3, CARDIAK, CCK, GIG30, RICK, RIP2}, ATG16L1 (autophagy related 16 like 1) [NCBI Gene 55054] {aka APG16L, ATG16A, ATG16L, IBD10, WDR30}, NLRC4 (NLR family CARD domain containing 4) [NCBI Gene 58484] {aka AIFEC, CARD12, CLAN, CLAN1, CLANA, CLANB}, TNF (tumor necrosis factor) [NCBI Gene 7124] {aka DIF, IMD127, TNF-alpha, TNFA, TNFSF2, TNLG1F}, IL2 (interleukin 2) [NCBI Gene 3558] {aka IL-2, TCGF, lymphokine}, STXBP2 (syntaxin binding protein 2) [NCBI Gene 6813] {aka Hunc18b, MUNC18-2, UNC18-2, UNC18B, pp10122, unc-18B}, PLA2G4A (phospholipase A2 group IVA) [NCBI Gene 5321] {aka GURDP, PLA2G4, cPLA2, cPLA2-alpha}, FERMT1 (FERM domain containing kindlin 1) [NCBI Gene 55612] {aka C20orf42, DTGCU2, KIND1, UNC112A, URP1}, SELL (selectin L) [NCBI Gene 6402] {aka CD62L, LAM1, LECAM1, LEU8, LNHR, LSEL}, G6PC3 (glucose-6-phosphatase catalytic subunit 3) [NCBI Gene 92579] {aka SCN4, UGRP}, Trav6-3 (T cell receptor alpha variable 6-3) [NCBI Gene 328483] {aka Gm13948, Gm193, Gm4, TCR}, SKIC2 (SKI2 subunit of superkiller complex) [NCBI Gene 6499] {aka 170A, DDX13, HLP, SKI2, SKI2W, SKIV2}, CASP8 (caspase 8) [NCBI Gene 841] {aka ALPS2B, CAP4, Casp-8, FLICE, MACH, MCH5}, RAC1 (Rac family small GTPase 1) [NCBI Gene 5879] {aka MIG5, MRD48, Rac-1, TC-25, p21-Rac1}, MALT1 (MALT1 paracaspase) [NCBI Gene 10892] {aka IMD12, MLT, MLT1, PCASP1}, CD28 (CD28 molecule) [NCBI Gene 940] {aka IMD123, Tp44}, NLRP6 (NLR family pyrin domain containing 6) [NCBI Gene 171389] {aka AVR, CLR11.4, NALP6, NAVR, NAVR/AVR, PAN3}, RELA (RELA proto-oncogene, NF-kB subunit) [NCBI Gene 5970] {aka AIF3BL3, CMCU, NFKB3, p65}, PTEN (phosphatase and tensin homolog) [NCBI Gene 5728] {aka 10q23del, BZS, CWS1, DEC, GLM2, MHAM}, TRIM22 (tripartite motif containing 22) [NCBI Gene 10346] {aka GPSTAF50, RNF94, STAF50}, Duox2 (dual oxidase 2) [NCBI Gene 214593] {aka A430065P05Rik, LNOX2, NOXEF2, P138-TOX, THOX2}, FBN2 (fibrillin 2) [NCBI Gene 2201] {aka CCA, DA9, EOMD}, STAT5A (signal transducer and activator of transcription 5A) [NCBI Gene 6776] {aka MGF, STAT5}, HPS3 (HPS3 biogenesis of lysosomal organelles complex 2 subunit 1) [NCBI Gene 84343] {aka BLOC2S1, SUTAL}, PLCG2 (phospholipase C gamma 2) [NCBI Gene 5336] {aka APLAID, FCAS3, PLC-IV, PLC-gamma-2}, ITGA4 (integrin subunit alpha 4) [NCBI Gene 3676] {aka CD49D, IA4}, Cd80 (CD80 antigen) [NCBI Gene 12519] {aka B71, Cd28l, Ly-53, Ly53, MIC17, TSA1}, TTC7A (tetratricopeptide repeat domain 7A) [NCBI Gene 57217] {aka GIDID, MINAT, TTC7}, IL2RG (interleukin 2 receptor subunit gamma) [NCBI Gene 3561] {aka CD132, CIDX, IL-2RG, IMD4, P64, SCIDX}, BTK (Bruton tyrosine kinase) [NCBI Gene 695] {aka AGMX1, AT, ATK, BPK, IGHD3, IMD1}, ICOS (inducible T cell costimulator) [NCBI Gene 29851] {aka AILIM, CD278, CVID1}, CD8A (CD8 subunit alpha) [NCBI Gene 925] {aka CD8, CD8alpha, IMD116, Leu2, p32}, ATP8A2 (ATPase phospholipid transporting 8A2) [NCBI Gene 51761] {aka ATP, ATPIB, CAMRQ4, IB, ML-1}, NCF4 (neutrophil cytosolic factor 4) [NCBI Gene 4689] {aka CGD3, NCF, P40PHOX, SH3PXD4}, C3 (complement C3) [NCBI Gene 718] {aka AHUS5, ARMD9, ASP, C3a, C3b, CPAMD1}, RNF128 (ring finger protein 128) [NCBI Gene 79589] {aka GRAIL}, ZAP70 (zeta chain of T cell receptor associated protein kinase 70) [NCBI Gene 7535] {aka ADMIO2, IMD48, SRK, STCD, STD, TZK}, CD40LG (CD40 ligand) [NCBI Gene 959] {aka CD154, CD40L, HIGM1, IGM, IMD3, T-BAM}, IKBKG (inhibitor of nuclear factor kappa B kinase regulatory subunit gamma) [NCBI Gene 8517] {aka AMCBX1, EDAID1, FIP-3, FIP3, Fip3p, IKK-gamma}, FOXP3 (forkhead box P3) [NCBI Gene 50943] {aka AIID, DIETER, IPEX, JM2, PIDX, XPID}, TNFAIP3 (TNF alpha induced protein 3) [NCBI Gene 7128] {aka A20, AIFBL1, AISBL, OTUD7C, TNFA1P2}, IL7 (interleukin 7) [NCBI Gene 3574] {aka IL-7, IMD130}, DCLRE1C (DNA cross-link repair 1C) [NCBI Gene 64421] {aka A-SCID, DCLREC1C, RS-SCID, SCIDA, SNM1C}, IL2RA (interleukin 2 receptor subunit alpha) [NCBI Gene 3559] {aka CD25, IDDM10, IL2R, IMD41, TCGFR, p55}, Nlrp12 (NLR family, pyrin domain containing 12) [NCBI Gene 378425] {aka Nalp12, PYPAF7, monarch-1}, ITGB8 (integrin subunit beta 8) [NCBI Gene 3696], MASP2 (MBL associated serine protease 2) [NCBI Gene 10747] {aka MAP-2, MAP19, MASP-2, MASP1P1, sMAP}, GUCY2C (guanylate cyclase 2C) [NCBI Gene 2984] {aka DIAR6, GC-C, GCC, GUC2C, HSER, MECIL}
- **Diseases:** autoimmune thrombocytopenias (MESH:D016553), impaired humoral immunity (MESH:C562390), autoimmune enteropathy (MESH:C538273), maculopapular, (MESH:D010267), X-linked hyper IgM syndrome (MESH:D053307), skeletal involvement (MESH:C564676), autoimmune hematologic disorders.134 (MESH:D006402), FHL type 5 (MESH:C567752), erythema multiforme bullosum (MESH:D004892), malabsorption (MESH:D008286), neurodegenerative lysosomal storage disease (MESH:D016464), GI symptoms (MESH:D012817), inflammatory cytokines (MESH:D000080424), platelet storage pool defect (MESH:D010981), FHL (MESH:D051359), dermatitis (MESH:D003872), IEI (MESH:D007154), granuloma formation.70 (MESH:D058426), IgG subclass deficiency (MESH:D017099), juvenile idiopathic arthritis (MESH:D001171), lipomas (MESH:D008067), PHTS (MESH:D006223), oral/genital ulcers (MESH:D019226), IEIs.35 (MESH:C566928), pustular dermatitis (MESH:D004474), liver cirrhosis.157 (MESH:D008103), arthralgia (MESH:D018771), blistering skin lesions (MESH:D001768), weight loss (MESH:D015431), skin lesions (MESH:D012871), IPEX (MESH:C580192), urticaria (MESH:D014581), ORGANOIDS (MESH:D054000), peritonitis (MESH:D010538), ZAP70 deficiency (MESH:C536722), posterior leukoencephalopathy (MESH:D054038), defects (MESH:D000013), splenomegaly (MESH:D013163), bacterial infection (MESH:D001424), FMF (MESH:D010505), multiple sclerosis (MESH:D009103), perianal disease (MESH:D000694), B-cell (MESH:D015448), bacterial and viral infections (MESH:D014777), Flares (MESH:D000067251), IgA deficiency (MESH:D004406), LAD1 (MESH:C535887), necrotizing enterocolitis (MESH:D020345), systemic lupus erythematosus (MESH:D008180), metabolic disease (MESH:D008659), adenoid lymphoid hyperplasia (MESH:D019310), Loeys-Dietz syndrome (MESH:D055947), SYSTEMS (MESH:D015619), inborn errors of immunity.35 (MESH:C563728), X-linker reticulate pigmentary disorder (MESH:C564461), liver disease (MESH:D008107), gastritis.71 (MESH:D005756), skin ulcers (MESH:D012883), allergic diseases (MESH:D004342), protein-losing enteropathy (MESH:D011504)
- **Chemicals:** IP3 (MESH:D015544), indole-3-aldehyde (MESH:C012381), propionate (MESH:D011422), tryptophan (MESH:D014364), isoprenoid (MESH:D013729), prostaglandin (MESH:D011453), ceroid (MESH:D002566), histamine (MESH:D006632), aminosalicylates (MESH:D010131), carbohydrate (MESH:D002241), eculizumab (MESH:C481642), triglycerides (MESH:D014280), steroid (MESH:D013256), phosphatidyl inositol-3,4,5-triphosphate (MESH:C060974), Ca2+ (-), MDP (MESH:D000119), water (MESH:D014867), spermine (MESH:D013096), proline (MESH:D011392), superoxide (MESH:D013481), Butyrate (MESH:D002087), calcium (MESH:D002118), geranylgeranyl pyrophosphate (MESH:C002963), LPS (MESH:D008070), SCFA (MESH:D005232), cGMP (MESH:D006152), chloride (MESH:D002712), cholesterol (MESH:D002784), lipid (MESH:D008055), phosphate (MESH:D010710), RA (MESH:D014212), taurine (MESH:D013654), Na+ (MESH:D012964), ROS (MESH:D017382), purine (MESH:C030985)
- **Species:** Homo sapiens (human, species) [taxon 9606], Bacteria Latreille et al. 1825 (Bacteria stick insect, genus) [taxon 629395], Candida albicans (species) [taxon 5476], Mus musculus (house mouse, species) [taxon 10090]
- **Mutations:** TTC7A

## Full text

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## References

253 references — full list in the complete paper: https://tomesphere.com/paper/PMC7379380/full.md

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Source: https://tomesphere.com/paper/PMC7379380