# Inhibition of Resistance-Refractory P. falciparum Kinase PKG Delivers Prophylactic, Blood Stage, and Transmission-Blocking Antiplasmodial Activity

**Authors:** Manu Vanaerschot, James M. Murithi, Charisse Flerida A. Pasaje, Sonja Ghidelli-Disse, Louis Dwomoh, Megan Bird, Natasha Spottiswoode, Nimisha Mittal, Lauren B. Arendse, Edward S. Owen, Kathryn J. Wicht, Giulia Siciliano, Markus Bösche, Tomas Yeo, T.R. Santha Kumar, Sachel Mok, Emma F. Carpenter, Marla J. Giddins, Olalla Sanz, Sabine Ottilie, Pietro Alano, Kelly Chibale, Manuel Llinás, Anne-Catrin Uhlemann, Michael Delves, Andrew B. Tobin, Christian Doerig, Elizabeth A. Winzeler, Marcus C.S. Lee, Jacquin C. Niles, David A. Fidock

PMC · DOI: 10.1016/j.chembiol.2020.04.001 · Cell Chemical Biology · 2020-07-16

## TL;DR

A new antimalarial drug, MMV030084, targets a key Plasmodium protein (PKG) and shows broad effectiveness against malaria without causing resistance.

## Contribution

MMV030084 is a novel antimalarial chemotype that inhibits Plasmodium PKG and shows activity across multiple life stages without resistance mutations in PKG.

## Key findings

- MMV030084 inhibits sporozoite invasion, merozoite egress, and gamete exflagellation in Plasmodium.
- cGMP-dependent protein kinase (PKG) is identified as the primary target of MMV030084.
- Resistance to MMV030084 is mediated by TKL3, but PKG itself remains mutation-free under drug pressure.

## Abstract

The search for antimalarial chemotypes with modes of action unrelated to existing drugs has intensified with the recent failure of first-line therapies across Southeast Asia. Here, we show that the trisubstituted imidazole MMV030084 potently inhibits hepatocyte invasion by Plasmodium sporozoites, merozoite egress from asexual blood stage schizonts, and male gamete exflagellation. Metabolomic, phosphoproteomic, and chemoproteomic studies, validated with conditional knockdown parasites, molecular docking, and recombinant kinase assays, identified cGMP-dependent protein kinase (PKG) as the primary target of MMV030084. PKG is known to play essential roles in Plasmodium invasion of and egress from host cells, matching MMV030084's activity profile. Resistance selections and gene editing identified tyrosine kinase-like protein 3 as a low-level resistance mediator for PKG inhibitors, while PKG itself never mutated under pressure. These studies highlight PKG as a resistance-refractory antimalarial target throughout the Plasmodium life cycle and promote MMV030084 as a promising Plasmodium PKG-targeting chemotype.

•MMV030084 inhibits P. falciparum liver and asexual blood stages and male gametes•Proteomic and conditional knockdown studies identified PfPKG as the target•Resistance selection studies identified TKL3 as a low-level resistance mediator•PKG is a promising resistance-refractory target for antimalarial drug development

MMV030084 inhibits P. falciparum liver and asexual blood stages and male gametes

Proteomic and conditional knockdown studies identified PfPKG as the target

Resistance selection studies identified TKL3 as a low-level resistance mediator

PKG is a promising resistance-refractory target for antimalarial drug development

Vanaerschot et al. report an antimalarial, MMV030084, with potent antiplasmodial activity against all stages of human infection by Plasmodium falciparum. Metabolomic, phosphoproteomic, chemoproteomic, and gene-editing studies identified cGMP-dependent protein kinase (PKG) as the primary target, which did not mutate under selective drug pressure.

## Linked entities

- **Genes:** PRKG1 (protein kinase cGMP-dependent 1) [NCBI Gene 5592], TKL3 (Dihydroxyacetone synthase) [NCBI Gene 28923310]
- **Chemicals:** MMV030084 (PubChem CID 22185475)
- **Diseases:** malaria (MONDO:0005136)
- **Species:** Plasmodium falciparum (taxon 5833)

## Full-text entities

- **Genes:** TGFBR1 (transforming growth factor beta receptor 1) [NCBI Gene 7046] {aka AAT5, ACVRLK4, ALK-5, ALK5, ESS1, LDS1}, EIF3A (eukaryotic translation initiation factor 3 subunit A) [NCBI Gene 8661] {aka EIF3, EIF3S10, P167, TIF32, eIF3-p170, eIF3-theta}, PKN3 (protein kinase N3) [NCBI Gene 29941] {aka UTDP4-1}, NLK (nemo like kinase) [NCBI Gene 51701], UTS2B (urotensin 2B) [NCBI Gene 257313] {aka U-IIB, U2B, UIIB, URP, UTS2D}, RAB1B (RAB1B, member RAS oncogene family) [NCBI Gene 81876], Uts2b (urotensin 2B) [NCBI Gene 224065] {aka Gm538, U2B, Urp, Uts2d}, SUPT16H (SPT16 homolog, facilitates chromatin remodeling subunit) [NCBI Gene 11198] {aka CDC68, FACTP140, NEDDFAC, SPT16, SPT16/CDC68}, MBP (myelin basic protein) [NCBI Gene 4155], ABCC1 (ATP binding cassette subfamily C member 1 (ABCC1 blood group)) [NCBI Gene 4363] {aka ABC29, ABCC, DFNA77, GS-X, MRP, MRP1}, CAT (catalase) [NCBI Gene 847], Ppp1cc (protein phosphatase 1 catalytic subunit gamma) [NCBI Gene 19047] {aka PP-1G, PP1, dis2m1}, SUB1 (SUB1 regulator of transcription) [NCBI Gene 10923] {aka P15, PC4, p14}, PKG [NCBI Gene 811928], GAPDH (glyceraldehyde-3-phosphate dehydrogenase) [NCBI Gene 2597] {aka G3PD, GAPD, HEL-S-162eP}, NPY4R (neuropeptide Y receptor Y4) [NCBI Gene 5540] {aka NPY4-R, PP1, PPYR1, Y4}, KRT13 (keratin 13) [NCBI Gene 3860] {aka CK13, K13, WSN2}, TGFBR2 (transforming growth factor beta receptor 2) [NCBI Gene 7048] {aka AAT3, FAA3, LDS1B, LDS2, LDS2B, MFS2}, Gapdh (glyceraldehyde-3-phosphate dehydrogenase) [NCBI Gene 14433] {aka Gapd}, CIAO1 (cytosolic iron-sulfur assembly component 1) [NCBI Gene 9391] {aka CIA1, MMDS10, WDR39}, PRKG1 (protein kinase cGMP-dependent 1) [NCBI Gene 5592] {aka AAT8, PKG, PKG1, PRKG1B, PRKGR1B, cGK}, EMP1 (epithelial membrane protein 1) [NCBI Gene 2012] {aka CL-20, EMP-1, TMP}, DHFR (dihydrofolate reductase) [NCBI Gene 1719] {aka DHFR1, DYR}, RBMS3 (RNA binding motif single stranded interacting protein 3) [NCBI Gene 27303], FER (FER tyrosine kinase) [NCBI Gene 2241] {aka PPP1R74, TYK3, p94-Fer}, CSNK1D (casein kinase 1 delta) [NCBI Gene 1453] {aka ASPS, CKI-delta, CKId, CKIdelta, FASPS2, HCKID}, RIPK2 (receptor interacting serine/threonine kinase 2) [NCBI Gene 8767] {aka CARD3, CARDIAK, CCK, GIG30, RICK, RIP2}
- **Diseases:** cKD (MESH:D020763), infection (MESH:D007239), Malaria (MESH:D008288), parasitemias (MESH:D018512), hepatocellular carcinoma (MESH:D006528), toxicity (MESH:D064420), ABS (MESH:D062706)
- **Chemicals:** MnCl2 (MESH:C025340), CO2 (MESH:D002245), kanamycin (MESH:D007612), HEPES (MESH:D006531), MgCl2 (MESH:D015636), phosphopeptides (MESH:D010748), TiO2 (MESH:C009495), sodium phosphate (MESH:C018279), Phenol Red (MESH:D010637), pyrimidine (MESH:C030986), N-acetyl glucosamine (MESH:D000117), sunitinib (MESH:D000077210), sodium hydroxide (MESH:D012972), DTT (MESH:D004229), chloramphenicol (MESH:D002701), Tween (MESH:D011136), His (MESH:D006639), staurosporine (MESH:D019311), Polyacrylamide (MESH:C016679), PD173955 (MESH:C403095), chloroquine (MESH:D002738), ADP (MESH:D000244), Glycerol (MESH:D005990), sodium bicarbonate (MESH:D017693), cGMP (MESH:D006152), Sepharose (MESH:D012685), NaF (MESH:D012969), CHAPS (MESH:C028213), glycine (MESH:D005998), amine (MESH:D000588), beta-glycerophosphate (MESH:C031463), ATP (MESH:D000255), artemisinins (MESH:D037621), PBS (MESH:D007854), NaCl (MESH:D012965), hypoxanthine (MESH:D019271), anhydrotetracycline (MESH:C016229), water (MESH:D014867), hydrogen (MESH:D006859), IPTG (MESH:D007544), DMEM (-), aTc (MESH:C003438), methylene blue (MESH:D008751), D-Sorbitol (MESH:D013012), purvalanol B (MESH:C113584), N2 (MESH:D009584), sodium vanadate (MESH:D014638), PVDF (MESH:C024865), chlorpropamide (MESH:D002747), saponin (MESH:D012503), disulfide (MESH:D004220), gentamicin (MESH:D005839), methanol (MESH:D000432), imidazole (MESH:C029899), Igepal-CA630 (MESH:C010615), SDS (MESH:D012967), L-glutamine (MESH:D005973), EDTA (MESH:D004492), Blasticidin (MESH:C004500), DMSO (MESH:D004121)
- **Species:** Ovis aries (domestic sheep, species) [taxon 9940], Plasmodium falciparum (malaria parasite P. falciparum, species) [taxon 5833], Mus musculus (house mouse, species) [taxon 10090], Plasmodium berghei (species) [taxon 5821], Canis lupus familiaris (dog, subspecies) [taxon 9615], Escherichia coli (E. coli, species) [taxon 562], Toxoplasma gondii (species) [taxon 5811], Homo sapiens (human, species) [taxon 9606], Rattus norvegicus (brown rat, species) [taxon 10116], Eimeria (genus) [taxon 5800]
- **Mutations:** V249L, H237D, T1268, T1268R, V54E, Ser/Thr, T145M, T145G, I1250M
- **Cell lines:** BALB/c — Mus musculus (Mouse), Spontaneously immortalized cell line (CVCL_0184), 3D7-A10 — Mus musculus (Mouse), Hybridoma (CVCL_C2B1), Dd2-B2 — Cricetulus griseus (Chinese hamster), Transformed cell line (CVCL_YD16), K-562 — Homo sapiens (Human), Blast phase chronic myelogenous leukemia, BCR-ABL1 positive, Cancer cell line (CVCL_0004), Hep G2 — Homo sapiens (Human), Hepatoblastoma, Cancer cell line (CVCL_0027), TKL3T1268R — Homo sapiens (Human), Polycystic kidney disease, Induced pluripotent stem cell (CVCL_YS28), Rosetta2 — Homo sapiens (Human), Colon carcinoma, Cancer cell line (CVCL_A628), HEK-293 — Homo sapiens (Human), Transformed cell line (CVCL_0045), S2 — Drosophila melanogaster (Fruit fly), Spontaneously immortalized cell line (CVCL_Z232), NF54 — Homo sapiens (Human), Ovarian carcinosarcoma, Cancer cell line (CVCL_W770)

## Full text

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## Figures

4 figures with captions in the complete paper: https://tomesphere.com/paper/PMC7369637/full.md

## References

60 references — full list in the complete paper: https://tomesphere.com/paper/PMC7369637/full.md

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Source: https://tomesphere.com/paper/PMC7369637