# RNA polymerase III transcription as a disease factor

**Authors:** Meghdad Yeganeh, Nouria Hernandez

PMC · DOI: 10.1101/gad.333989.119 · Genes & Development · 2020-07-01

## TL;DR

This review explores how problems with RNA polymerase III transcription are linked to various human diseases and the possible reasons behind these connections.

## Contribution

The paper provides a comprehensive overview of diseases associated with RNA polymerase III dysfunction and highlights novel regulatory roles of its products.

## Key findings

- Pol III products regulate proteins like PKR through direct association.
- Pol III-derived short RNAs influence gene expression and microRNA levels.
- Dysfunction in Pol III transcription is linked to multiple human disorders.

## Abstract

In this review, Yeganeh et al. summarize different human diseases that have been linked to defects in the Pol III transcription apparatus or to Pol III products imbalance and discuss the possible underlying mechanisms.

RNA polymerase (Pol) III is responsible for transcription of different noncoding genes in eukaryotic cells, whose RNA products have well-defined functions in translation and other biological processes for some, and functions that remain to be defined for others. For all of them, however, new functions are being described. For example, Pol III products have been reported to regulate certain proteins such as protein kinase R (PKR) by direct association, to constitute the source of very short RNAs with regulatory roles in gene expression, or to control microRNA levels by sequestration. Consistent with these many functions, deregulation of Pol III transcribed genes is associated with a large variety of human disorders. Here we review different human diseases that have been linked to defects in the Pol III transcription apparatus or to Pol III products imbalance and discuss the possible underlying mechanisms.

## Linked entities

- **Proteins:** EIF2AK2 (eukaryotic translation initiation factor 2 alpha kinase 2)

## Full-text entities

- **Genes:** CETN1 (centrin 1) [NCBI Gene 1068] {aka CEN1, CETN}, Rpph1 (ribonuclease P RNA component H1) [NCBI Gene 85029] {aka Gm24821, H1RNA, Rmrp5, Rpr}, FOS (Fos proto-oncogene, AP-1 transcription factor subunit) [NCBI Gene 2353] {aka AP-1, C-FOS, p55}, MIR217 (microRNA 217) [NCBI Gene 406999] {aka MIRN217, mir-217}, APBB2 (amyloid beta precursor protein binding family B member 2) [NCBI Gene 323] {aka FE65L, FE65L1}, miR-566 [NCBI Gene 693151], ELAVL1 (ELAV like RNA binding protein 1) [NCBI Gene 1994] {aka ELAV1, HUR, Hua, MelG}, TrnI (tRNA-Ile) [NCBI Gene 17733], Mapk1 (mitogen-activated protein kinase 1) [NCBI Gene 26413] {aka 9030612K14Rik, ERK, Erk2, MAPK2, PRKM2, Prkm1}, MYC (MYC proto-oncogene, bHLH transcription factor) [NCBI Gene 4609] {aka MRTL, MYCC, bHLHe39, c-Myc}, SOX9 (SRY-box transcription factor 9) [NCBI Gene 6662] {aka CMD1, CMPD1, ENH13, SRA1, SRXX2, SRXY10}, Mir122 (microRNA 122) [NCBI Gene 387231] {aka Mir122a, Mir122b, Mirn122a, Mirn122b, mir-122, mmu-mir-122}, FMNL2 (formin like 2) [NCBI Gene 114793] {aka FHOD2}, MBP (myelin basic protein) [NCBI Gene 4155], AKT1 (AKT serine/threonine kinase 1) [NCBI Gene 207] {aka AKT, PKB, PKB-ALPHA, PRKBA, RAC, RAC-ALPHA}, POLR3E (RNA polymerase III subunit E) [NCBI Gene 55718] {aka C37, RPC5, SIN}, EXOSC2 (exosome component 2) [NCBI Gene 23404] {aka RRP4, Rrp4p, SHRF, hRrp4p, p7}, ESR1 (estrogen receptor 1) [NCBI Gene 2099] {aka ER, ESR, ESRA, ESTRR, Era, NR3A1}, YAP1 (Yes1 associated transcriptional regulator) [NCBI Gene 10413] {aka COB1, YAP, YAP-1, YAP2, YAP65, YKI}, ECRG4 (ECRG4 augurin precursor) [NCBI Gene 84417] {aka C2orf40}, MMP2 (matrix metallopeptidase 2) [NCBI Gene 4313] {aka CLG4, CLG4A, MMP-2, MMP-II, MONA, TBE-1}, TACR1 (tachykinin receptor 1) [NCBI Gene 6869] {aka NK1R, NKIR, SPR, TAC1R}, RMRP (RNA component of mitochondrial RNA processing endoribonuclease) [NCBI Gene 6023] {aka CHH, NME1, RMRPR, RRP2}, TERT (telomerase reverse transcriptase) [NCBI Gene 7015] {aka CMM9, DKCA2, DKCB4, EST2, PFBMFT1, TCS1}, POLR3B (RNA polymerase III subunit B) [NCBI Gene 55703] {aka C128, CMT1I, HLD8, INMAP, RPC2}, n-TRtct5 (nuclear encoded tRNA arginine 5 (anticodon TCT)) [NCBI Gene 102467638] {aka n-Tr20}, MMP9 (matrix metallopeptidase 9) [NCBI Gene 4318] {aka CLG4B, GELB, MANDP2, MMP-9}, VEGFA (vascular endothelial growth factor A) [NCBI Gene 7422] {aka L-VEGF, MVCD1, VEGF, VPF}, POLR3GL (RNA polymerase III subunit GL) [NCBI Gene 84265] {aka RPC32HOM, SOFM, flj32422}, IFNA1 (interferon alpha 1) [NCBI Gene 3439] {aka IFL, IFN, IFN-ALPHA, IFN-alphaD, IFNA13, IFNA@}, Gtpbp2 (GTP binding protein 2) [NCBI Gene 56055] {aka nmf205}, CASP3 (caspase 3) [NCBI Gene 836] {aka CPP32, CPP32B, SCA-1}, NLRP3 (NLR family pyrin domain containing 3) [NCBI Gene 114548] {aka AGTAVPRL, AII, AVP, C1orf7, CIAS1, CLR1.1}, KRAS (KRAS proto-oncogene, GTPase) [NCBI Gene 3845] {aka 'C-K-RAS, C-K-RAS, CFC2, K-RAS2A, K-RAS2B, K-RAS4A}, Polr3c (polymerase (RNA) III (DNA directed) polypeptide C) [NCBI Gene 74414] {aka 4933407E01Rik, RPC3, RPC62}, GABBR2 (gamma-aminobutyric acid type B receptor subunit 2) [NCBI Gene 9568] {aka DEE59, EIEE59, GABABR2, GPR51, GPRC3B, HG20}, POLR3K (RNA polymerase III subunit K) [NCBI Gene 51728] {aka C11, C11-RNP3, HLD21, My010, RPC10, RPC11}, CCND1 (cyclin D1) [NCBI Gene 595] {aka BCL1, D11S287E, PRAD1, U21B31}, MIR206 (microRNA 206) [NCBI Gene 406989] {aka MIRN206, miRNA206, mir-206}, TGFBI (transforming growth factor beta induced) [NCBI Gene 7045] {aka BIGH3, CDB1, CDG2, CDGG1, CSD, CSD1}, ANXA2 (annexin A2) [NCBI Gene 302] {aka ANX2, ANX2L4, CAL1H, HEL-S-270, LIP2, LPC2}, BRF1 (BRF1 general transcription factor IIIB subunit) [NCBI Gene 2972] {aka BRF, BRF-1, CFDS, GTF3B, HEL-S-76p, TAF3B2}, EGF (epidermal growth factor) [NCBI Gene 1950] {aka HOMG4, URG}, MAF1 (MAF1 negative regulator of RNA polymerase III) [NCBI Gene 84232], BCYRN1 (brain cytoplasmic RNA 1) [NCBI Gene 618] {aka BC200, BC200a, LINC00004, NCRNA00004}, MMP13 (matrix metallopeptidase 13) [NCBI Gene 4322] {aka CLG3, MANDP1, MDST, MMP-13}, RN7SL1 (RNA component of signal recognition particle 7SL1) [NCBI Gene 6029] {aka 7L1a, 7SL, RN7SL, RNSRP1}, TP53 (tumor protein p53) [NCBI Gene 7157] {aka BCC7, BMFS5, LFS1, P53, TRP53}, MIR675 (microRNA 675) [NCBI Gene 100033819] {aka MIRN675, hsa-mir-675}, CDH1 (cadherin 1) [NCBI Gene 999] {aka Arc-1, BCDS1, CD324, CDHE, ECAD, LCAM}, CCNE2 (cyclin E2) [NCBI Gene 9134] {aka CYCE2}, POLR3F (RNA polymerase III subunit F) [NCBI Gene 10621] {aka C34, IMD101, RPC39, RPC6}, NFKB1 (nuclear factor kappa B subunit 1) [NCBI Gene 4790] {aka CVID12, EBP-1, KBF1, NF-kB, NF-kB1, NF-kappa-B1}, IL18 (interleukin 18) [NCBI Gene 3606] {aka IGIF, IL-18, IL-1g, IL1F4}, EIF2AK2 (eukaryotic translation initiation factor 2 alpha kinase 2) [NCBI Gene 5610] {aka PKR, PPP1R83, PRKR}, DNMT1 (DNA methyltransferase 1) [NCBI Gene 1786] {aka ADCADN, AIM, CXXC9, DNMT, HSN1E, MCMT}, S100A11 (S100 calcium binding protein A11) [NCBI Gene 6282] {aka HEL-S-43, MLN70, S100C}, POLR3H (RNA polymerase III subunit H) [NCBI Gene 171568] {aka C25, RPC22.9, RPC8}, JAK2 (Janus kinase 2) [NCBI Gene 3717] {aka JTK10}, MAPK1 (mitogen-activated protein kinase 1) [NCBI Gene 5594] {aka ERK, ERK-2, ERK2, ERT1, MAPK2, NS13}
- **Diseases:** neurological (cerebellar, extrapyramidal, pyramidal, and cognitive) (MESH:D001480), colon cancer (MESH:D015179), cholangiocarcinoma (MESH:D018281), paraneoplastic disease (MESH:D059545), obesity (MESH:D009765), ADDH (MESH:C567313), melanoma (MESH:D008545), immunodeficiency (MESH:D007153), hypogonadotropic hypogonadism (4H) syndrome (MESH:D007006), vasculitis (MESH:D014657), infection (MESH:D007239), hypomyelination with cerebella atrophy and hypoplasia of the corpus callosum (MESH:D061085), neurodegeneration (MESH:D019636), bone growth deficiency (MESH:D006130), intellectual disability (MESH:D008607), lung carcinoma (MESH:D008175), esophageal squamous cell carcinoma (MESH:D000077277), prostate cancer (MESH:D011471), rectal tumors (MESH:D012004), neurological abnormality (MESH:D009461), inherited neurodegenerative diseases (MESH:D020271), allergy (MESH:D004342), anemia (MESH:D000740), delayed pubertal maturation (MESH:C537685), autoimmune rheumatic disease (MESH:D012216), central nervous system anomalies (MESH:D009421), diabetic nephropathy (MESH:D003928), HCC (MESH:D006528), Alzheimer's disease (MESH:D000544), Treacher Collins syndrome (MESH:D008342), breast tumorigenesis (MESH:D061325), chickenpox (MESH:D002644), leukodystrophies (MESH:D007966), MDWH (MESH:C563574), gastric and prostate (MESH:D011472), multiple myeloma (MESH:D009101), endometrial cancer (MESH:D016889), ovarian cancer (MESH:D010051), hearing loss (MESH:D034381), growth failure (MESH:D051437), mitochondrial myopathy (MESH:D017240), renal cell carcinoma (MESH:D002292), deficiency in Pol III (MESH:D020152), dental anomalies (OMIM:614188), CNS infection (MESH:D002494), cerebellar-facial-dental syndrome (OMIM:616202), thyroid (MESH:D013966), gastric cancer (MESH:D013274), inflammation (MESH:D007249), Systemic sclerosis (MESH:D012595), esophageal squamous cell cancer (MESH:D018307), bladder cancer (MESH:D001749), AC (MESH:D000230), Hypomyelinating leukodystrophies (MESH:C536319), papillary thyroid cancer (MESH:D000077273), tumorigenesis (MESH:D063646), metastasis (MESH:D009362), cerebellar hypoplasia (MESH:C562568), (dental, endocrine, and ocular) abnormalities (MESH:D004700), hypodontia (MESH:D000848)
- **Chemicals:** ROS (MESH:D017382), ethanol (MESH:D000431), poly(dA:dT) (MESH:D011067), SeCys (MESH:D017279), Alcohol (MESH:D000438), N-ethyl-N-nitrosourea (MESH:D005038), tamoxifen (MESH:D013629)
- **Species:** Mus musculus (house mouse, species) [taxon 10090], Human papillomavirus 16 (serotype) [taxon 333760], Danio rerio (leopard danio, species) [taxon 7955], Saccharomyces cerevisiae (baker's yeast, species) [taxon 4932], Homo sapiens (human, species) [taxon 9606]
- **Mutations:** p.P292, M852V, R41W, p.N74S, G672E, G12V, p.R279Q, c.1771-6C > G, p.N32I, p.M825V, R103H, p.M825V
- **Cell lines:** HeLa — Homo sapiens (Human), Human papillomavirus-related endocervical adenocarcinoma, Cancer cell line (CVCL_0030), SNU-683 — Homo sapiens (Human), Glycogen storage disease type III, Finite cell line (CVCL_CX20), SqCC — Homo sapiens (Human), Hypopharyngeal squamous cell carcinoma, Cancer cell line (CVCL_0D71), SNU-601 — Homo sapiens (Human), Gastric signet ring cell adenocarcinoma, Cancer cell line (CVCL_0101), HEK293 — Homo sapiens (Human), Transformed cell line (CVCL_0045), Nthy-ori — Homo sapiens (Human), Transformed cell line (CVCL_2659), RPE — Mus musculus (Mouse), Spontaneously immortalized cell line (CVCL_GQ00), MCF7 — Homo sapiens (Human), Invasive breast carcinoma of no special type, Cancer cell line (CVCL_0031), IMR90 — Homo sapiens (Human), Finite cell line (CVCL_0347), Rat1a — Rattus norvegicus (Rat), Spontaneously immortalized cell line (CVCL_0512), NDM29 — Homo sapiens (Human), Telomerase immortalized cell line (CVCL_B7EL), HFE-145 — Mus musculus (Mouse), Hybridoma (CVCL_D143), MEFs — Mus musculus (Mouse), Finite cell line (CVCL_9115)

## Full text

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## Figures

4 figures with captions in the complete paper: https://tomesphere.com/paper/PMC7328520/full.md

## References

146 references — full list in the complete paper: https://tomesphere.com/paper/PMC7328520/full.md

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Source: https://tomesphere.com/paper/PMC7328520