# Bifidobacteria exhibit social behavior through carbohydrate resource sharing in the gut

**Authors:** Christian Milani, Gabriele Andrea Lugli, Sabrina Duranti, Francesca Turroni, Leonardo Mancabelli, Chiara Ferrario, Marta Mangifesta, Arancha Hevia, Alice Viappiani, Matthias Scholz, Stefania Arioli, Borja Sanchez, Jonathan Lane, Doyle V. Ward, Rita Hickey, Diego Mora, Nicola Segata, Abelardo Margolles, Douwe van Sinderen, Marco Ventura

PMC · DOI: 10.1038/srep15782 · Scientific Reports · 2015-10-28

## TL;DR

Bifidobacteria in the gut can break down carbohydrates and share these resources with other microbes, shaping the gut microbiome.

## Contribution

This study reveals that bifidobacteria have extensive carbohydrate-degrading genes and may engage in resource sharing through metabolic specialization.

## Key findings

- Bifidobacteria have more carbohydrate-related genes than many other gut microbes.
- Transcriptome data supports bifidobacterial involvement in glycan metabolism.
- Bifidobacteria may share carbohydrate resources through cross-feeding and metabolic specialization.

## Abstract

Bifidobacteria are common and frequently dominant members of the gut microbiota of
many animals, including mammals and insects. Carbohydrates are considered key carbon
sources for the gut microbiota, imposing strong selective pressure on the complex
microbial consortium of the gut. Despite its importance, the genetic traits that
facilitate carbohydrate utilization by gut microbiota members are still poorly
characterized. Here, genome analyses of 47 representative Bifidobacterium
(sub)species revealed the genes predicted to be required for the degradation and
internalization of a wide range of carbohydrates, outnumbering those found in many
other gut microbiota members. The glycan-degrading abilities of bifidobacteria are
believed to reflect available carbon sources in the mammalian gut. Furthermore,
transcriptome profiling of bifidobacterial genomes supported the involvement of
various chromosomal loci in glycan metabolism. The widespread occurrence of
bifidobacterial saccharolytic features is in line with metagenomic and
metatranscriptomic datasets obtained from human adult/infant faecal samples, thereby
supporting the notion that bifidobacteria expand the human glycobiome. This study
also underscores the hypothesis of saccharidic resource sharing among bifidobacteria
through species-specific metabolic specialization and cross feeding, thereby forging
trophic relationships between members of the gut microbiota.

## Linked entities

- **Species:** Bifidobacterium (taxon 1678)

## Full-text entities

- **Genes:** DROSHA (drosha ribonuclease III) [NCBI Gene 29102] {aka ETOHI2, HSA242976, RANSE3L, RN3, RNASE3L, RNASEN}, GHS (Goldenhar syndrome) [NCBI Gene 7971], mucin [NCBI Gene 100508689], GGH (gamma-glutamyl hydrolase) [NCBI Gene 8836] {aka GATD10, GH}, GH2 (growth hormone 2) [NCBI Gene 2689] {aka GH-V, GHB2, GHL, GHV, hGH-V}, ABCB6 (ATP binding cassette subfamily B member 6 (LAN blood group)) [NCBI Gene 10058] {aka ABC, LAN, MTABC3, PRP, umat}
- **Species:** Bifidobacterium mongoliense (species) [taxon 518643], Bacteroides sp. (species) [taxon 29523], Bifidobacterium pullorum subsp. gallinarum (subspecies) [taxon 78344], Bifidobacterium catenulatum subsp. kashiwanohense (subspecies) [taxon 630129], Bifidobacterium boum (species) [taxon 78343], Bifidobacterium pseudocatenulatum (species) [taxon 28026], Oryctolagus cuniculus (domestic rabbit, species) [taxon 9986], Bifidobacterium bohemicum (species) [taxon 638617], Bifidobacterium scardovii (species) [taxon 158787], Bifidobacterium coryneforme (species) [taxon 1687], Bifidobacterium stellenboschense (species) [taxon 762211], Bifidobacterium ruminantium (species) [taxon 78346], Bifidobacterium bombi (species) [taxon 471511], Bifidobacterium biavatii (species) [taxon 762212], Helicobacter sp. MO (species) [taxon 201178], Bifidobacterium pullorum subsp. saeculare (subspecies) [taxon 78257], Bifidobacterium choerinum (species) [taxon 35760], Bos taurus (bovine, species) [taxon 9913], Bifidobacterium dentium (species) [taxon 1689], Bifidobacterium cuniculi (species) [taxon 1688], Apis mellifera (bee, species) [taxon 7460], Bifidobacterium actinocoloniiforme (species) [taxon 638619], Bifidobacterium bifidum (species) [taxon 1681], Lactobacillus acidophilus (species) [taxon 1579], Bifidobacterium asteroides (species) [taxon 1684], Bifidobacterium crudilactis (species) [taxon 327277], Homo sapiens (human, species) [taxon 9606]
- **Cell lines:** S2 — Drosophila melanogaster (Fruit fly), Spontaneously immortalized cell line (CVCL_Z232)

## Full text

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## Figures

4 figures with captions in the complete paper: https://tomesphere.com/paper/PMC4623478/full.md

## References

43 references — full list in the complete paper: https://tomesphere.com/paper/PMC4623478/full.md

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Source: https://tomesphere.com/paper/PMC4623478