# Lysine Methyltransferase SETD7 (SET7/9) Regulates ROS Signaling through mitochondria and NFE2L2/ARE pathway

**Authors:** Shuying He, Dafydd R. Owen, Scott A. Jelinsky, Lih-Ling Lin

PMC · DOI: 10.1038/srep14368 · Scientific Reports · 2015-10-05

## TL;DR

This study shows that the enzyme SETD7 regulates harmful oxygen molecules in cells, suggesting it could be a target for treating related diseases.

## Contribution

The study reveals a novel role of SETD7 in regulating ROS signaling via mitochondrial and NFE2L2/ARE pathways.

## Key findings

- SETD7 inhibition reduces oxidative stress and pro-inflammatory cytokine production in macrophages and Beas-2B cells.
- SETD7 negatively regulates mitochondrial antioxidant functions through PPARGC1A and NFE2L2.
- SETD7 directly interacts with NFE2L2, influencing antioxidant gene expression and ROS clearance.

## Abstract

Reactive oxygen species (ROS) homeostasis requires stringent regulation. ROS imbalance, especially ROS accumulation, has profound implications in various disease pathogenesis. Lysine methylation of histone and non-histone proteins has been implicated in various cellular responses. The main objective of this study is to investigate the role of SET domain containing lysine methyltransferase SETD7 (SET7/9) in the regulation of ROS-mediated signaling. Here we report that inhibition of SETD7 with siRNA or a SETD7 small molecule inhibitor in both macrophages and a human bronchial epithelial cell line (Beas-2B) were able to counter NF-ĸB-induced oxidative stress and pro-inflammatory cytokine production. Meanwhile, inhibition of SETD7 elevates mitochondria antioxidant functions via negative regulation of PPARGC1A and NFE2L2. Using a co-expression system and purified proteins, we detected direct interaction between SETD7 and NFE2L2. These results indicate that lysine methylation by SETD7 is important for the fine-tuning of ROS signaling through its regulation on pro-inflammatory responses, mitochondrial function and the NFE2L2/ARE pathway. Up-regulation of multiple antioxidant genes and improved ROS clearance by inhibition of SETD7 suggests the potential benefit of targeting SETD7 in treating ROS-associated diseases.

## Linked entities

- **Genes:** SETD7 (SET domain containing 7, histone lysine methyltransferase) [NCBI Gene 80854], PPARGC1A (PPARG coactivator 1 alpha) [NCBI Gene 10891], NFE2L2 (NFE2 like bZIP transcription factor 2) [NCBI Gene 4780]

## Full-text entities

- **Genes:** SOD2 (superoxide dismutase 2) [NCBI Gene 6648] {aka GC1, GClnc1, IPO-B, IPOB, MNSOD, MVCD6}, Nfe2l2 (nuclear factor, erythroid derived 2, like 2) [NCBI Gene 18024] {aka Nrf2}, KEAP1 (kelch like ECH associated protein 1) [NCBI Gene 9817] {aka INrf2, KLHL19}, CXCL8 (C-X-C motif chemokine ligand 8) [NCBI Gene 3576] {aka GCP-1, GCP1, IL8, LECT, LUCT, LYNAP}, PPARGC1A (PPARG coactivator 1 alpha) [NCBI Gene 10891] {aka LEM6, PGC-1(alpha), PGC-1alpha, PGC-1v, PGC1, PGC1A}, RELA (RELA proto-oncogene, NF-kB subunit) [NCBI Gene 5970] {aka AIF3BL3, CMCU, NFKB3, p65}, Sox2 (SRY (sex determining region Y)-box 2) [NCBI Gene 20674] {aka Sox-2, lcc, ysb}, Rela (Rela proto-oncogene, NFKB subunit) [NCBI Gene 19697] {aka p65, p65 NF-kappa B, p65 NFkB}, CUL3 (cullin 3) [NCBI Gene 8452] {aka CUL-3, NEDAUS, PHA2E}, Ppargc1a (peroxisome proliferative activated receptor, gamma, coactivator 1 alpha) [NCBI Gene 19017] {aka A830037N07Rik, Gm11133, PGC-1, PPARGC-1-alpha, Pgc-1alpha, Pgc1}, IL6 (interleukin 6) [NCBI Gene 3569] {aka BSF-2, BSF2, CDF, HGF, HSF, IFN-beta-2}, Setd7 (SET domain containing (lysine methyltransferase) 7) [NCBI Gene 73251] {aka 1600028F23Rik, H3K4MT, KMT7, Set7, Set7/9, mKIAA1717}, SETD7 (SET domain containing 7, histone lysine methyltransferase) [NCBI Gene 80854] {aka KMT7, SET7, SET7/9, SET9}, Suv39h1 (suppressor of variegation 3-9 1) [NCBI Gene 20937] {aka DXHXS7466e, H3-K9-HMTase 1, KMT1A, mIS6}, LIG3 (DNA ligase 3) [NCBI Gene 3980] {aka LIG2, LIG3alpha, MTDPS20}, CSF2 (colony stimulating factor 2) [NCBI Gene 1437] {aka CSF, GMCSF}, MYC (MYC proto-oncogene, bHLH transcription factor) [NCBI Gene 4609] {aka MRTL, MYCC, bHLHe39, c-Myc}, Pgr (progesterone receptor) [NCBI Gene 18667] {aka 9930019P03Rik, NR3C3, PR, PR-A, PR-B}, NFKBIA (NFKB inhibitor alpha) [NCBI Gene 4792] {aka EDAID2, IKBA, MAD-3, NFKBI}, NFE2L2 (NFE2 like bZIP transcription factor 2) [NCBI Gene 4780] {aka IMDDHH, NRF2, Nrf-2}, TXN (thioredoxin) [NCBI Gene 7295] {aka TRDX, TRX, TRX1, TXN1, Trx80}, Trp53-ps (transformation related protein 53, pseudogene) [NCBI Gene 22060], Stat3 (signal transducer and activator of transcription 3) [NCBI Gene 20848] {aka 1110034C02Rik, Aprf}, CAT (catalase) [NCBI Gene 847], GAPDH (glyceraldehyde-3-phosphate dehydrogenase) [NCBI Gene 2597] {aka G3PD, GAPD, HEL-S-162eP}, HMOX1 (heme oxygenase 1) [NCBI Gene 3162] {aka HMOX1D, HO-1, HSP32, bK286B10}, Sirt1 (sirtuin 1) [NCBI Gene 93759] {aka SIR2L1, Sir2, Sir2a, Sir2alpha}, Taf10 (TATA-box binding protein associated factor 10) [NCBI Gene 24075] {aka 30kDa, TAFII30, Taf2h}, CSE [NCBI Gene 1433], Dnmt1 (DNA methyltransferase 1) [NCBI Gene 13433] {aka Cxxc9, Dnmt, Dnmt1o, MCMT, MTase, Met-1}, Foxo3 (forkhead box O3) [NCBI Gene 56484] {aka 1110048B16Rik, 2010203A17Rik, FKHRL1, Fkhr2, Foxo3a}, NFKB1 (nuclear factor kappa B subunit 1) [NCBI Gene 4790] {aka CVID12, EBP-1, KBF1, NF-kB, NF-kB1, NF-kappa-B1}
- **Diseases:** oxidative (MESH:D028361), cardiovascular defects (MESH:D018376), metabolic disorders (MESH:D008659), hyperglycemia (MESH:D006943), COPD (MESH:D029424), Cytotoxicity (MESH:D064420), chronic inflammation (MESH:D007249), oncogenesis (MESH:D063646), mitochondrial fragmentation (MESH:D012892), GM-MDM (MESH:D007645), neurodegeneration (MESH:D019636)
- **Chemicals:** H2O2 (MESH:D006861), ATP (MESH:D000255), superoxide (MESH:D013481), MitoSOX  Red (MESH:C000597839), MitoSOX (MESH:C521281), formaldehyde (MESH:D005557), Oligofectamine (MESH:C484027), LONZA (-), SDS (MESH:D012967), (R)-PFI-2 (MESH:C000592938), PVDF (MESH:C024865), oxygen (MESH:D010100), DMSO (MESH:D004121), Formazan (MESH:D005562), ROS (MESH:D017382), CO2 (MESH:D002245), DCFH-DA (MESH:C029569), tetrazolium salt (MESH:D013778), lipid (MESH:D008055), DAPI (MESH:C007293), nitric oxide (MESH:D009569), GST (MESH:C059555),  (MESH:D016207)
- **Species:** Homo sapiens (human, species) [taxon 9606], Mus musculus (house mouse, species) [taxon 10090]
- **Mutations:** Y337W, tyrosine to tryptophan
- **Cell lines:** S2 — Drosophila melanogaster (Fruit fly), Spontaneously immortalized cell line (CVCL_Z232), HEK293 — Homo sapiens (Human), Transformed cell line (CVCL_0045), Beas-2B — Homo sapiens (Human), Transformed cell line (CVCL_0168)

## Full text

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## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC4593030/full.md

## References

52 references — full list in the complete paper: https://tomesphere.com/paper/PMC4593030/full.md

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Source: https://tomesphere.com/paper/PMC4593030