# High genetic abundance of Rpi-blb2/Mi-1.2/Cami gene family in Solanaceae

**Authors:** Lina Zhao, Qijun Zhang, Rongchao Gao, Sihai Yang, Haoxuan Liu, Xiaohui Zhang

PMC · DOI: 10.1186/s12862-015-0493-z · BMC Evolutionary Biology · 2015-09-30

## TL;DR

This study explores a plant resistance gene family in Solanaceae plants, revealing high genetic diversity and copy number variation across species.

## Contribution

The paper identifies a unique resistance gene family with high genetic abundance and divergence across Solanaceae species.

## Key findings

- The Rpi-blb2/Mi-1.2/Cami gene family shows large copy number variation and high divergence within and between species.
- Frequent frameshift mutations and gene conversion events were observed in the LRR regions of this gene family.
- The genetic diversity suggests that multi-resistance is a common trait in this resistance gene family.

## Abstract

Three NBS-LRR genes, Rpi-blb2, Mi-1.2, and Cami, constitute a very special plant resistance gene family. These genes confer resistance against 4 distantly related pathogen species in 3 different Solanaceae hosts. To characterize this noted resistance, we conducted a series of studies on this gene family.

First, homologs of this gene family were identified in the pepper, tomato and potato genomes. This revealed a large variation in copy number within this gene family among species and a great divergence was found both between and within species. To gain more information pertaining to gene resistance within this family, 121 LRR regions were cloned in 16 different wild/cultivated potato accessions. Again, frequent copy number variations and a high level of divergence between homolog were observed common among accessions. The divergence within species was so high that it reaches the level of divergence between species. Also, frequent frameshift mutations and abundant gene conversion events were identified in these LRR regions.

Our findings suggest that this family harbors an unusually high level of genetic abundance, making it of particular interest. Together with other reported examples, our study also provides evidence that multi-resistance is a common trait in R gene families like this.

The online version of this article (doi:10.1186/s12862-015-0493-z) contains supplementary material, which is available to authorized users.

## Linked entities

- **Genes:** Mi-1.2 (root-knot nematode resistance protein) [NCBI Gene 543551], CALM1 (calmodulin 1) [NCBI Gene 801]

## Full-text entities

- **Genes:** Mi-1.2 (root-knot nematode resistance protein) [NCBI Gene 543551], ATPase [NCBI Gene 102580668]
- **Diseases:** root knot nematode (MESH:D009349), root and crown rot (MESH:D005535), inflammatory (MESH:D007249), late blight (MESH:D000067562), NBS (MESH:D049932), blast disease (MESH:D001753), plant diseases (MESH:D010939), bacterial wilt (MESH:D001424)
- **Chemicals:** ZQ (-)
- **Species:** Bemisia tabaci (sweet potato whitefly, species) [taxon 7038], Oryza sativa (Asian cultivated rice, species) [taxon 4530], Solanum demissum (species) [taxon 50514], Fulvia fulva (species) [taxon 5499], Arabidopsis thaliana (mouse-ear cress, species) [taxon 3702], Erysiphe neolycopersici (species) [taxon 212602], Capsicum frutescens (bird pepper, species) [taxon 4073], Solanum bulbocastanum (ornamental nightshade, species) [taxon 147425], Solanum lycopersicum (tomato, species) [taxon 4081], Phytophthora infestans (potato late blight agent, species) [taxon 4787], Solanum tuberosum (potatoes, species) [taxon 4113], Sorghum bicolor (broomcorn, species) [taxon 4558], Capsicum (peppers, genus) [taxon 4071]
- **Cell lines:** LH — Homo sapiens (Human), Transformed cell line (CVCL_V626)

## Full text

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## Figures

3 figures with captions in the complete paper: https://tomesphere.com/paper/PMC4590265/full.md

## References

46 references — full list in the complete paper: https://tomesphere.com/paper/PMC4590265/full.md

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Source: https://tomesphere.com/paper/PMC4590265