# The Application of DNA Barcodes for the Identification of Marine Crustaceans from the North Sea and Adjacent Regions

**Authors:** Michael J. Raupach, Andrea Barco, Dirk Steinke, Jan Beermann, Silke Laakmann, Inga Mohrbeck, Hermann Neumann, Terue C. Kihara, Karin Pointner, Adriana Radulovici, Alexandra Segelken-Voigt, Christina Wesse, Thomas Knebelsberger

PMC · DOI: 10.1371/journal.pone.0139421 · PLoS ONE · 2015-09-29

## TL;DR

This study creates a large DNA barcode library for marine crustaceans in the North Sea, confirming DNA barcoding as an effective tool for species identification.

## Contribution

The study presents the most extensive DNA barcode library for Crustacea in terms of species number to date.

## Key findings

- 1,332 DNA barcodes covering 205 crustacean species were generated.
- High intraspecific distances were found for some species, suggesting possible overlooked species or taxonomic issues.
- Haplotype-sharing was observed in two spider crab species, indicating a need for taxonomic revision.

## Abstract

During the last years DNA barcoding has become a popular method of choice for molecular specimen identification. Here we present a comprehensive DNA barcode library of various crustacean taxa found in the North Sea, one of the most extensively studied marine regions of the world. Our data set includes 1,332 barcodes covering 205 species, including taxa of the Amphipoda, Copepoda, Decapoda, Isopoda, Thecostraca, and others. This dataset represents the most extensive DNA barcode library of the Crustacea in terms of species number to date. By using the Barcode of Life Data Systems (BOLD), unique BINs were identified for 198 (96.6%) of the analyzed species. Six species were characterized by two BINs (2.9%), and three BINs were found for the amphipod species Gammarus salinus Spooner, 1947 (0.4%). Intraspecific distances with values higher than 2.2% were revealed for 13 species (6.3%). Exceptionally high distances of up to 14.87% between two distinct but monophyletic clusters were found for the parasitic copepod Caligus elongatus Nordmann, 1832, supporting the results of previous studies that indicated the existence of an overlooked sea louse species. In contrast to these high distances, haplotype-sharing was observed for two decapod spider crab species, Macropodia parva Van Noort & Adema, 1985 and Macropodia rostrata (Linnaeus, 1761), underlining the need for a taxonomic revision of both species. Summarizing the results, our study confirms the application of DNA barcodes as highly effective identification system for the analyzed marine crustaceans of the North Sea and represents an important milestone for modern biodiversity assessment studies using barcode sequences.

## Linked entities

- **Species:** Amphipoda (taxon 6821), Copepoda (taxon 6830), Decapoda (taxon 6683), Isopoda (taxon 29979), Thecostraca (taxon 116172)

## Full-text entities

- **Diseases:** ID (MESH:C537985)
- **Species:** Eumalacostraca (subclass) [taxon 72041], Sessilia [taxon 116167], Macropodia tenuirostris (species) [taxon 1129384], Macropodia parva (species) [taxon 1416552], Thecostraca (class) [taxon 116172], Kentrogonida [taxon 37910], Macrocheira kaempferi (species) [taxon 1124764], Melita palmata (species) [taxon 1732112], Euphausiacea (krill, order) [taxon 6816], Malacostraca (class) [taxon 6681], Gymnoplea (superorder) [taxon 116570], Monocorophium insidiosum (species) [taxon 1582901], Photis longicaudata (species) [taxon 1732161], Pagurus pubescens (species) [taxon 587157], Siphonostomatoida (order) [taxon 72033], Eucarida [taxon 6682], Pseudocalanus elongatus (species) [taxon 136184], Austrominius modestus (species) [taxon 1732093], Temora longicornis (species) [taxon 261852], Calanus helgolandicus (species) [taxon 114068], Eriocheir sinensis (Chinese hairy crab, species) [taxon 95602], Pisidia longicornis (species) [taxon 874270], Podoplea (superorder) [taxon 116571], Idotea baltica (species) [taxon 82763], Caligus elongatus (species) [taxon 257370], Praunus inermis (species) [taxon 1732120], Rhizocephala (infraclass) [taxon 37909], Hoplocarida (mantis shrimps, superorder) [taxon 75389], Gammarus salinus (species) [taxon 178003], Pandalus montagui (species) [taxon 397978], Chondracanthus merluccii (species) [taxon 348844], Asellopsis intermedia (species) [taxon 1732134], Balanus crenatus (species) [taxon 164412], Balanus sp. (species) [taxon 88352], Crustacea [taxon 6657], Macropodia rostrata (species) [taxon 1129405], Peltogaster paguri (species) [taxon 399078], Astacilla intermedia (species) [taxon 1732136]

## Full text

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## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC4587929/full.md

## References

119 references — full list in the complete paper: https://tomesphere.com/paper/PMC4587929/full.md

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Source: https://tomesphere.com/paper/PMC4587929