# High quality draft genome sequence of Corynebacterium ulceribovis type strain IMMIB-L1395T (DSM 45146T)

**Authors:** Atteyet F. Yassin, Alla Lapidus, James Han, T.B.K. Reddy, Marcel Huntemann, Amrita Pati, Natalia Ivanova, Victor Markowitz, Tanja Woyke, Hans-Peter Klenk, Nikos C. Kyrpides

PMC · DOI: 10.1186/s40793-015-0036-7 · Standards in Genomic Sciences · 2015-08-05

## TL;DR

This paper presents the high-quality genome sequence of the Corynebacterium ulceribovis type strain, isolated from a cow's udder skin.

## Contribution

The study provides a detailed genome sequence and annotation for the type strain of Corynebacterium ulceribovis.

## Key findings

- The genome is 2,300,451 bp long and includes 2,104 protein-coding genes and 54 RNA-encoding genes.
- The strain contains corynomycolic acids in its cell wall and lacks tuberculostearic acid.

## Abstract

Corynebacterium ulceribovis strain IMMIB L-1395T (= DSM 45146T) is an aerobic to facultative anaerobic, Gram-positive, non-spore-forming, non-motile rod-shaped bacterium that was isolated from the skin of the udder of a cow, in Schleswig Holstein, Germany. The cell wall of C. ulceribovis contains corynemycolic acids. The cellular fatty acids are those described for the genus Corynebacterium, but tuberculostearic acid is not present. Here we describe the features of C. ulceribovis strain IMMIB L-1395T, together with genome sequence information and its annotation. The 2,300,451 bp long genome containing 2,104 protein-coding genes and 54 RNA-encoding genes and is part of the Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes (KMG) project.

The online version of this article (doi:10.1186/s40793-015-0036-7) contains supplementary material, which is available to authorized users.

## Linked entities

- **Species:** Corynebacterium ulceribovis (taxon 487732)

## Full-text entities

- **Genes:** otsB2 (trehalose 6-phosphate phosphatase) [NCBI Gene 888137], hsdM (type I restriction/modification system DNA methylase HsdM) [NCBI Gene 888278], hsdS (type I restriction/modification system specificity determinant HsdS) [NCBI Gene 887695], tatB [NCBI Gene 887143], treX (maltooligosyl trehalose synthase) [NCBI Gene 886353] {aka glgX}, pimB (alpha-(1-6)-phosphatidylinositol monomannoside mannosyltransferase) [NCBI Gene 887278], esxA (ESAT-6 protein EsxA) [NCBI Gene 886209] {aka esat-6}, Rv2611c [NCBI Gene 888618], iscS [NCBI Gene 887677], glyceraldehyde-3-phosphate dehydrogenase [NCBI Gene 886632], lipase [NCBI Gene 886728], gltA [NCBI Gene 885466], lipB [NCBI Gene 887626], CUT1 [NCBI Gene 885552], alanine racemase [NCBI Gene 887634], LipA [NCBI Gene 887922], ATPase [NCBI Gene 886352], dxs1 (1-deoxy-D-xylulose 5-phosphate synthase) [NCBI Gene 887461] {aka dxs}, malate synthase [NCBI Gene 885713], ImpA [NCBI Gene 885567], pks13 (polyketide synthase) [NCBI Gene 886133], PlsC [NCBI Gene 887744], diacylglycerol kinase [NCBI Gene 888429], Ffh [NCBI Gene 888242], Ino1 [NCBI Gene 887028], dapA [NCBI Gene 888289], MurB [NCBI Gene 887169], asd [NCBI Gene 885118], enoyl-CoA hydratase [NCBI Gene 888123], GlgP [NCBI Gene 886886], dfrA (dihydrofolate reductase) [NCBI Gene 887777] {aka folA}, fadE24 (acyl-CoA dehydrogenase) [NCBI Gene 887971], 2-dehydropantoate 2-reductase [NCBI Gene 888188], bioB [NCBI Gene 886301], SecYEG [NCBI Gene 888559], yajC (membrane protein secretion factor YajC) [NCBI Gene 887346], GlgA [NCBI Gene 887805], thiG [NCBI Gene 886396], bioD [NCBI Gene 886338], ThiC [NCBI Gene 886379], rraA (RNase E regulator RraA) [NCBI Gene 886181] {aka menG}, phosphoenolpyruvate carboxykinase [NCBI Gene 886744], 6-phosphogluconolactonase [NCBI Gene 886617], alpha-mannosidase [NCBI Gene 888048], isocitrate lyase [NCBI Gene 886291], diaminopimelate decarboxylase [NCBI Gene 886960], GalU [NCBI Gene 885341], MurD [NCBI Gene 888000], dapE [NCBI Gene 887386], otsA (trehalose-phosphate synthase) [NCBI Gene 888404], polyketide synthase [NCBI Gene 885519], MurF [NCBI Gene 887826], dapF [NCBI Gene 888614], FtsY [NCBI Gene 887205], transaldolase [NCBI Gene 886606], ThiD [NCBI Gene 886375], folE (GTP cyclohydrolase I) [NCBI Gene 885346] {aka gchA}, folP1 (dihydropteroate synthase) [NCBI Gene 885831], treZ (malto-oligosyltrehalose trehalohydrolase) [NCBI Gene 886355] {aka glgZ}, Rv3032 (glycogen synthase) [NCBI Gene 888185]
- **Diseases:** PIMs (MESH:D009800), infections (MESH:D007239), TDM (MESH:C562603), LMM (MESH:C536030)
- **Species:** Corynebacterium mastitidis (species) [taxon 161890], Corynebacterium ulceribovis (species) [taxon 487732], Corynebacterium sphenisci (species) [taxon 191493], Actinomycetales (order) [taxon 2037], Mycobacterium tuberculosis (species) [taxon 1773], Corynebacterium bovis (species) [taxon 36808], Corynebacterium pseudotuberculosis (species) [taxon 1719], Corynebacterium durum F0235 (strain) [taxon 1035195], Corynebacterium xerosis (species) [taxon 1725], Francisella (genus) [taxon 262], Corynebacterium (genus) [taxon 1716], Corynebacterium freneyi (species) [taxon 134034], Mycobacterium tuberculosis H37Rv (strain) [taxon 83332], Enterococcus faecalis V583 (strain) [taxon 226185], Corynebacterium amycolatum (species) [taxon 43765], Aggregatibacter actinomycetemcomitans (species) [taxon 714], Bacteriophage sp. (species) [taxon 38018], Rhodococcus (genus) [taxon 1661425], Homo sapiens (human, species) [taxon 9606], Corynebacterium sputi (species) [taxon 489915], Corynebacterium ulcerans (species) [taxon 65058], Staphylococcus aureus (species) [taxon 1280], Bos taurus (bovine, species) [taxon 9913], Clostridioides difficile (species) [taxon 1496], Corynebacterium glutamicum (species) [taxon 1718], Rubrobacter xylanophilus (species) [taxon 49319], Nocardia (genus) [taxon 1817]
- **Mutations:** L1395T, L1395(T), C) with 50, proline-glutamine

## Full text

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## Figures

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## References

130 references — full list in the complete paper: https://tomesphere.com/paper/PMC4572677/full.md

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Source: https://tomesphere.com/paper/PMC4572677