# How Leiomodin and Tropomodulin use a common fold for different actin assembly functions

**Authors:** Malgorzata Boczkowska, Grzegorz Rebowski, Elena Kremneva, Pekka Lappalainen, Roberto Dominguez

PMC · DOI: 10.1038/ncomms9314 · Nature communications · 2016-03-15

## TL;DR

This paper explores how two similar proteins, Tropomodulins and Leiomodins, evolved to perform different roles in building actin filaments.

## Contribution

The study reveals that functional differences arise from structural adaptations in conserved domains, not from unique extensions.

## Key findings

- Tmods and Lmods have similar but distinct localization in sarcomeres and do not compete biochemically.
- Lmods' nucleation function depends on the loss of capping elements and the specialization of the ABS2 domain.
- The WH2 domain in Lmods plays an auxiliary role in nucleation rather than being essential.

## Abstract

How proteins sharing a common fold have evolved different functions is a fundamental question in biology. Tropomodulins (Tmods) are prototypical actin filament pointed-end-capping proteins, whereas their homologs, Leiomodins (Lmods), are powerful filament nucleators. We show that Tmods and Lmods do not compete biochemically, and display similar but distinct localization in sarcomeres. Changes along the polypeptide chains of Tmods and Lmods exquisitely adapt their functions for capping vs. nucleation. Tmods have alternating tropomyosin (TM)- and actin-binding sites (TMBS1, ABS1, TMBS2, ABS2). Lmods additionally contain a C-terminal extension featuring an actin-binding WH2 domain. Unexpectedly, the different activities of Tmods and Lmods do not arise from the Lmod-specific extension. Instead, nucleation by Lmods depends on two major adaptations – the loss of pointed-end-capping elements present in Tmods and the specialization of the highly conserved ABS2 for recruitment of two or more actin subunits. The WH2 domain plays only an auxiliary role in nucleation.

## Linked entities

- **Proteins:** Tm1 (Tropomyosin 1), MCL1 (MCL1 apoptosis regulator, BCL2 family member), ACTIN (hypothetical protein)

## Full-text entities

- **Genes:** LMOD3 (leiomodin 3) [NCBI Gene 56203] {aka NEM10}, THBD (thrombomodulin) [NCBI Gene 281529], WASL (WASP like actin nucleation promoting factor) [NCBI Gene 8976] {aka N-WASP, NWASP, WASPB}, LMOD1 (leiomodin 1) [NCBI Gene 25802] {aka 1D, 64kD, D1, MMIHS3, SM-LMOD, SMLMOD}, ACTE1 (actin epsilon 1) [NCBI Gene 528168], GSN (gelsolin) [NCBI Gene 2934] {aka ADF, AGEL, AMYLD4}, Lmod1 (leiomodin 1) [NCBI Gene 304816], PFN1 (profilin 1) [NCBI Gene 5216] {aka ALS18, PDB7}, Lmod2 (leiomodin 2) [NCBI Gene 296935], Fn1 (fibronectin 1) [NCBI Gene 25661] {aka FIBNEC, fn-1}, Tmod1 (tropomodulin 1) [NCBI Gene 25566] {aka E-Tmod, Tmod}, Lmod3 (leiomodin 3) [NCBI Gene 500267] {aka RGD1564924}, ACTN1 (actinin alpha 1) [NCBI Gene 87] {aka BDPLT15}, LMOD2 (leiomodin 2) [NCBI Gene 442721] {aka C-LMOD, CLMOD, CMD2G}, TMOD1 (tropomodulin 1) [NCBI Gene 7111] {aka D9S57E, ETMOD, TMOD}, Tmod1 (tropomodulin 1) [NCBI Gene 21916] {aka E-Tmod, Tmod}
- **Diseases:** nemaline myopathy (MESH:D017696)
- **Chemicals:** hydroxyapatite (MESH:D017886), penicillin (MESH:D010406), EGTA (MESH:D004533), Alexa Fluor 647 (MESH:C569686), glycerol (MESH:D005990), phenylephrine (MESH:D010656), TM (MESH:D013932), NaHCO3 (MESH:D017693), MgSO4 (MESH:D008278), DTT (MESH:D004229), MES (MESH:C004550), 1,4- diazabicyclo[2.2.2]octane (MESH:C007306), His (MESH:D006639), streptomycin (MESH:D013307), phenylmethyl sulfonyl fluoride (MESH:D010664), HEPES (MESH:D006531), MgCl2 (MESH:D015636), KCl (MESH:D011189), acetone (MESH:D000096), Triton X-100 (MESH:D017830), pyrene (MESH:C030984), chitin (MESH:D002686), salt (MESH:D012492), dextrose (MESH:D005947), paraformaldehyde (MESH:C003043), polyethylene glycol (MESH:D011092), CaCl2 (MESH:D002122), NaN3 (MESH:D019810), glutamine (MESH:D005973), ITC (MESH:C009051), isopropanol (MESH:D019840), EDTA (MESH:D004492), Imidazole (MESH:C029899), 2-methyl-2,4-pentanediol (MESH:C011480), DMEM (-), cytosine arabinoside (MESH:D003561), nitrogen (MESH:D009584), NaCl (MESH:D012965), PBS (MESH:D007854), ATP (MESH:D000255)
- **Species:** Bos taurus (bovine, species) [taxon 9913], Mus musculus (house mouse, species) [taxon 10090], Rattus norvegicus (brown rat, species) [taxon 10116], Homo sapiens (human, species) [taxon 9606]
- **Mutations:** Ala-314 to Phe, Ala-314 to Gln, Ala-365 to Gln, Tyr-170 to Val, Glu-177 to Phe
- **Cell lines:** BL21(DE3) — Mus musculus (Mouse), Hybridoma (CVCL_B7HM)

## Full text

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## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC4571291/full.md

## References

29 references — full list in the complete paper: https://tomesphere.com/paper/PMC4571291/full.md

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Source: https://tomesphere.com/paper/PMC4571291