# Draft genome sequence of the extremely halophilic archaeon Haladaptatus cibarius type strain D43T isolated from fermented seafood

**Authors:** Hae-Won Lee, Dae-Won Kim, Mi-Hwa Lee, Byung-Yong Kim, Yong-Joon Cho, Kyung June Yim, Hye Seon Song, Jin-Kyu Rhee, Myung-Ji Seo, Hak-Jong Choi, Jong-Soon Choi, Dong-Gi Lee, Changmann Yoon, Young-Do Nam, Seong Woon Roh

PMC · DOI: 10.1186/s40793-015-0051-8 · Standards in Genomic Sciences · 2015-08-13

## TL;DR

This paper presents the draft genome sequence of a salt-loving archaeon, Haladaptatus cibarius, isolated from fermented seafood.

## Contribution

The study provides the first annotated genome sequence of Haladaptatus cibarius, contributing to understanding halophilic archaea.

## Key findings

- The genome is 3,926,724 bp long with 4,092 protein-coding genes and 57 RNA genes.
- The average G + C content of the genome is 57.76%.
- The strain shows 98.7% 16S rRNA gene sequence similarity with Haladaptatus litoreus.

## Abstract

An extremely halophilic archaeon, Haladaptatus cibarius D43T, was isolated from traditional Korean salt-rich fermented seafood. Strain D43T shows the highest 16S rRNA gene sequence similarity (98.7 %) with Haladaptatus litoreus RO1-28T, is Gram-negative staining, motile, and extremely halophilic. Despite potential industrial applications of extremely halophilic archaea, their genome characteristics remain obscure. Here, we describe the whole genome sequence and annotated features of strain D43T. The 3,926,724 bp genome includes 4,092 protein-coding and 57 RNA genes (including 6 rRNA and 49 tRNA genes) with an average G + C content of 57.76 %.

## Linked entities

- **Genes:** 16S rRNA (16S ribosomal RNA) [NCBI Gene 2597965]
- **Species:** Haladaptatus cibarius (taxon 453847), Haladaptatus litoreus (taxon 553468), Mus musculus (taxon 10090)

## Full-text entities

- **Genes:** EREG (epiregulin) [NCBI Gene 2069] {aka EPR, ER, Ep}, TRNG (tRNA-Gly) [NCBI Gene 4563] {aka MTTG}, ALDH7A1 (aldehyde dehydrogenase 7 family member A1) [NCBI Gene 501] {aka ATQ1, EPD, EPEO4, PDE}, TMEM115 (transmembrane protein 115) [NCBI Gene 11070] {aka PL6}
- **Chemicals:** acetate (MESH:D000085), Amino acid (MESH:D000596), Carbon (MESH:D002244), Sucrose (MESH:D013395), Tween 80 (MESH:D011136), chloramphenicol (MESH:D002701), streptomycin (MESH:D013307), Lipid (MESH:D008055), anisomycin (MESH:D000841), sulfide (MESH:D013440), kanamycin (MESH:D007612), glycolipids (MESH:D006017), Oxygen (MESH:D010100), D-glucose (MESH:D005947), Salt (MESH:D012492), rifampicin (MESH:D012293), lactose (MESH:D007785), trehalose (MESH:D014199), ampicillin (MESH:D000667), nitrate (MESH:D009566), glycine betaine (MESH:D001622), D-fructose (MESH:D005632), Carbohydrate (MESH:D002241), nitrite (MESH:D009573), erythromycin (MESH:D004917), phosphatidylglycerol (MESH:D010715), Inorganic ion (-), formate (MESH:C030544), G + C (MESH:C057580), aphidicolin (MESH:D016590), water (MESH:D014867), NaCl (MESH:D012965), Nucleotide (MESH:D009711)
- **Species:** Halobacteria (class) [taxon 183963], Deinococcus sp. 43 (species) [taxon 532020], Methanosarcina semesiae (species) [taxon 84592], Halobacteriales (order) [taxon 2235], Haladaptatus (genus) [taxon 367188], Haladaptatus cibarius D43 (strain) [taxon 1455608], Haladaptatus cibarius (species) [taxon 453847]
- **Mutations:** D43T
- **Cell lines:** MD1T — Homo sapiens (Human), Dystrophia myotonica 1, Embryonic stem cell (CVCL_A251)

## Full text

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## Figures

3 figures with captions in the complete paper: https://tomesphere.com/paper/PMC4571117/full.md

## References

30 references — full list in the complete paper: https://tomesphere.com/paper/PMC4571117/full.md

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Source: https://tomesphere.com/paper/PMC4571117