# Physiological roles of pyruvate ferredoxin oxidoreductase and pyruvate formate-lyase in Thermoanaerobacterium saccharolyticum JW/SL-YS485

**Authors:** Jilai Zhou, Daniel G Olson, Anthony A Lanahan, Liang Tian, Sean Jean-Loup Murphy, Jonathan Lo, Lee R Lynd

PMC · DOI: 10.1186/s13068-015-0304-1 · Biotechnology for Biofuels · 2015-09-15

## TL;DR

This study identifies the roles of two enzymes in a thermophilic microbe that produces ethanol efficiently, showing how they contribute to energy and biosynthesis.

## Contribution

The study clarifies the physiological roles of PFOR and PFL in pyruvate metabolism in Thermoanaerobacterium saccharolyticum through gene deletion experiments.

## Key findings

- PFOR encoded by pforA is essential for pyruvate dissimilation.
- PFL encoded by pfl supports biosynthesis and compensates for PFOR loss.
- Deleting both pforA and pfl leads to reliance on acetate/formate and lactate production.

## Abstract

Thermoanaerobacter saccharolyticum is a thermophilic microorganism 
that has been engineered to produce ethanol at high titer (30–70 g/L) and greater than 90 % theoretical yield. However, few genes involved in pyruvate to ethanol production pathway have been unambiguously identified. In T. saccharolyticum, the products of six putative pfor gene clusters and one pfl gene may be responsible for the conversion of pyruvate to acetyl-CoA. To gain insights into the physiological roles of PFOR and PFL, we studied the effect of deletions of several genes thought to encode these activities.

It was found that pyruvate ferredoxin oxidoreductase enzyme (PFOR) is encoded by the pforA gene and plays a key role in pyruvate dissimilation. We further demonstrated that pyruvate formate-lyase activity (PFL) is encoded by the pfl gene. Although the pfl gene is normally expressed at low levels, it is crucial for biosynthesis in T. saccharolyticum. In pforA deletion strains, pfl expression increased and was able to partially compensate for the loss of PFOR activity. Deletion of both pforA and pfl resulted in a strain that required acetate and formate for growth and produced lactate as the primary fermentation product, achieving 88 % theoretical lactate yield.

PFOR encoded by Tsac_0046 and PFL encoded by Tsac_0628 are only two routes for converting pyruvate to acetyl-CoA in T. saccharolyticum. The physiological role of PFOR is pyruvate dissimilation, whereas that of PFL is supplying C1 units for biosynthesis.

The online version of this article (doi:10.1186/s13068-015-0304-1) contains supplementary material, which is available to authorized users.

## Linked entities

- **Genes:** PFN2 (profilin 2) [NCBI Gene 5217]
- **Proteins:** PFN2 (profilin 2)
- **Species:** Thermoanaerobacterium saccharolyticum (taxon 28896)

## Full-text entities

- **Diseases:** PDH (MESH:D015325)
- **Species:** Caldicellulosiruptor owensensis (species) [taxon 55205], Caldicellulosiruptor kristjanssonii [taxon 52765], Escherichia coli (E. coli, species) [taxon 562], Thermoanaerobacterium thermosaccharolyticum (species) [taxon 1517], Thermoanaerobacterium thermosaccharolyticum M0795 (strain) [taxon 698948], Caldicellulosiruptor saccharolyticus DSM 8903 (strain) [taxon 351627], Caldanaerobacter subterraneus subsp. tengcongensis MB4 (strain) [taxon 273068], Caldicellulosiruptor kronotskyensis (species) [taxon 413889], Acetivibrio thermocellus (species) [taxon 1515], Escherichia coli DH5[alpha] (strain) [taxon 668369], Caldicellulosiruptor hydrothermalis (species) [taxon 413888], Saccharomyces cerevisiae (baker's yeast, species) [taxon 4932], Caldicellulosiruptor obsidiansis (species) [taxon 717609], Caldicellulosiruptor lactoaceticus [taxon 52766], Thermoanaerobacterium thermosaccharolyticum DSM 571 (strain) [taxon 580327], Thermoanaerobacter sp. (species) [taxon 1755], Caldicellulosiruptor bescii DSM 6725 (strain) [taxon 521460], Thermoanaerobacter wiegelii (species) [taxon 46354], Acetivibrio thermocellus DSM 1313 (strain) [taxon 637887], Thermococcus guaymasensis (species) [taxon 110164], Clostridium acetobutylicum (species) [taxon 1488], Caldicellulosiruptor acetigenus 6A (strain) [taxon 632516], Caldicellulosiruptor bescii (species) [taxon 31899], Thermoanaerobacter pseudethanolicus ATCC 33223 (strain) [taxon 340099], Thermoanaerobacter kivui (species) [taxon 2325], Geobacillus stearothermophilus (species) [taxon 1422], Pyrococcus furiosus (species) [taxon 2261], Thermoanaerobacter italicus Ab9 (strain) [taxon 580331], Thermoanaerobacterium saccharolyticum (species) [taxon 28896], Acetivibrio clariflavus DSM 19732 (strain) [taxon 720554]
- **Cell lines:** LL1141 — Homo sapiens (Human), Transformed cell line (CVCL_9E15), S2 — Drosophila melanogaster (Fruit fly), Spontaneously immortalized cell line (CVCL_Z232), LL1164 — Homo sapiens (Human), Transformed cell line (CVCL_9E28), DH5alpha — Drosophila hydei (Fruit fly), Spontaneously immortalized cell line (CVCL_Z531), LL1142 — Homo sapiens (Human), Sporadic retinoblastoma, Finite cell line (CVCL_F129), LL1170 — Homo sapiens (Human), Huntington's disease, Finite cell line (CVCL_JB93), LL1178 — Homo sapiens (Human), Progeria, Finite cell line (CVCL_CV40)

## Full text

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## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC4570089/full.md

## References

35 references — full list in the complete paper: https://tomesphere.com/paper/PMC4570089/full.md

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Source: https://tomesphere.com/paper/PMC4570089