# Photoreceptor Specificity in the Light-Induced and COP1-Mediated Rapid Degradation of the Repressor of Photomorphogenesis SPA2 in Arabidopsis

**Authors:** Song Chen, Niels Lory, Johannes Stauber, Ute Hoecker

PMC · DOI: 10.1371/journal.pgen.1005516 · PLoS Genetics · 2015-09-14

## TL;DR

This study shows how light triggers the rapid breakdown of the SPA2 protein in plants, revealing a specific role for phytochrome photoreceptors in regulating plant light responses.

## Contribution

The paper identifies a phytochrome-specific mechanism for the light-induced degradation of SPA2, a key regulator of plant light signaling.

## Key findings

- SPA2 is rapidly degraded within 5–15 minutes after light exposure, and this process is mediated by phytochrome photoreceptors.
- Phytochrome A is essential for the blue light response in plants expressing only SPA2, highlighting its role in downregulating SPA2 function.
- SPA2 interacts with cryptochrome 1 but not cryptochrome 2, suggesting divergent evolutionary regulation of SPA proteins.

## Abstract

The Arabidopsis COP1/SPA E3 ubiquitin ligase is a key negative regulator that represses light signaling in darkness by targeting transcription factors involved in the light response for degradation. The COP1/SPA complex consists of COP1 and members of the four-member SPA protein family (SPA1-SPA4). Genetic analysis indicated that COP1/SPA2 function is particularly strongly repressed by light when compared to complexes carrying the other three SPAs, thereby promoting a light response after exposure of plants to extremely low light. Here, we show that the SPA2 protein is degraded within 5–15 min after exposure of dark-grown seedlings to a pulse of light. Phytochrome photoreceptors are required for the rapid degradation of SPA2 in red, far-red and also in blue light, whereas cryptochromes are not involved in the rapid, blue light-induced reduction in SPA2 protein levels. These results uncover a photoreceptor-specific mechanism of light-induced inhibition of COP1/SPA2 function. Phytochrome A (phyA) is required for the severe blue light responsiveness of spa triple mutants expressing only SPA2, thus confirming the important role of phyA in downregulating SPA2 function in blue light. In blue light, SPA2 forms a complex with cryptochrome 1 (cry1), but not with cryptochrome 2 (cry2) in vivo, indicating that the lack of a rapid blue light response of the SPA2 protein is only in part caused by a failure to interact with cryptochromes. Since SPA1 interacts with both cry1 and cry2, these results provide first molecular evidence that the light-regulation of different SPA proteins diverged during evolution. SPA2 degradation in the light requires COP1 and the COP1-interacting coiled-coil domain of SPA2, supporting that SPA2 is ubiquitinated by COP1. We propose that light perceived by phytochromes causes a switch in the ubiquitination activity of COP1/SPA2 from ubiquitinating downstream substrates to ubiquitinating SPA2, which subsequently causes a repression of COP1/SPA2 function.

Plants have evolved photoreceptors that initiate a signaling cascade to adjust growth and development to the ambient light environment. The CUL4-dependent COP1/SPA E3 ubiquitin ligase is a key negative regulator of light signaling whose function is repressed by light. Recent research has identified mechanisms that are common to both phytochrome and cryptochrome photoreceptors. Here, we have identified a mechanism of light-induced COP1/SPA repression that is specific to phytochrome photoreceptors. We show that the SPA2 protein is very rapidly degraded in red, far-red and blue light in a phytochrome-dependent fashion. We further show that SPA2 degradation in the light depends on COP1 and on the interaction of SPA2 with COP1. Hence, our results suggest a light-induced degradation of SPA2, but not of COP1, by the COP1/SPA2 ubiquitin ligase. The human ortholog of COP1, which functions without the plant-specific SPA proteins, is known to be regulated by autodegradation following DNA damage. Hence, autodegradation of components of this E3 ligase is a regulatory mechanism used in both humans and plants.

## Linked entities

- **Genes:** COP1 (COP1 E3 ubiquitin ligase) [NCBI Gene 64326], SFTPA2 (surfactant protein A2) [NCBI Gene 729238], SIPA1 (signal-induced proliferation-associated 1) [NCBI Gene 6494], phyA (Phytochrome A) [NCBI Gene 544176], CRY1 (cryptochrome circadian regulator 1) [NCBI Gene 1407], CRY2 (cryptochrome circadian regulator 2) [NCBI Gene 1408]
- **Proteins:** COP1 (COP1 E3 ubiquitin ligase), SFTPA2 (surfactant protein A2), SIPA1 (signal-induced proliferation-associated 1), PHYA (phytochrome A), CRY1 (cryptochrome 1), CRY2 (cryptochrome 2)
- **Species:** Arabidopsis (taxon 3701)

## Full-text entities

- **Genes:** RP9 (RP9 pre-mRNA splicing factor) [NCBI Gene 6100] {aka PAP-1, PAP1}, COP1 (Transducin/WD40 repeat-like superfamily protein) [NCBI Gene 817857] {aka ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, ATCOP1, CONSTITUTIVE PHOTOMORPHOGENIC 1, DEETIOLATED MUTANT 340, DET340, EMB168}, SPA3 (SPA1-related 3) [NCBI Gene 820767] {aka SPA1-related 3}, UVR8 (Regulator of chromosome condensation (RCC1) family protein) [NCBI Gene 836506] {aka MGI19.7, MGI19_7, UVB-RESISTANCE 8}, COP1 (COP1 E3 ubiquitin ligase) [NCBI Gene 64326] {aka CFAP78, FAP78, RFWD2, RNF200}, MYBBP1A (MYB binding protein 1a) [NCBI Gene 10514] {aka P160, PAP2, Pol5}, CRY2 (cryptochrome 2) [NCBI Gene 839529] {aka AT-PHH1, ATCRY2, CRYPTOCHROME 2 APOPROTEIN, F19P19.14, F19P19_14, FHA}, AT1G71780 (WD repeat protein) [NCBI Gene 843508] {aka F14O23.16, F14O23_16}, HSC70-1 (heat shock cognate protein 70-1) [NCBI Gene 831020] {aka ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, AT-HSC70-1, AtHsp70-1, HEAT SHOCK COGNATE PROTEIN 70, HEAT SHOCK PROTEIN 70-1, HSC70}, PHYB (phytochrome B) [NCBI Gene 816394] {aka HY3, MSF3.17, MSF3_17, OOP1, OUT OF PHASE 1, PHYTOCHROME B}, AT3G06710 (E3 ubiquitin ligase) [NCBI Gene 819856] {aka T8E24.2}, TP53 (tumor protein p53) [NCBI Gene 7157] {aka BCC7, BMFS5, LFS1, P53, TRP53}, CRY1 (cryptochrome 1) [NCBI Gene 826470] {aka ATCRY1, BLU1, BLUE LIGHT UNINHIBITED 1, CRYPTOCHROME 1 APOPROTEIN (BLUE LIGHT PHOTORECEPTOR, ELONGATED HYPOCOTYL 4, HY4}, PHYE (phytochrome E) [NCBI Gene 827538] {aka F15J5.100, F15J5_100, PHYTOCHROME E, phytochrome E}, CCT1 (phosphorylcholine cytidylyltransferase) [NCBI Gene 817786] {aka ATCCT1, T32F6.22, T32F6_22, phosphorylcholine cytidylyltransferase}, ZTL (Galactose oxidase/kelch repeat superfamily protein) [NCBI Gene 835842] {aka ADAGIO 1, ADO1, FKF1-LIKE PROTEIN 2, FKL2, LKP1, LOV KELCH PROTEIN 1}, CRY1 (cryptochrome circadian regulator 1) [NCBI Gene 1407] {aka DSPD, PHLL1}, SIPA1 (signal-induced proliferation-associated 1) [NCBI Gene 6494] {aka SPA1}, CRY2 (cryptochrome circadian regulator 2) [NCBI Gene 1408] {aka HCRY2, PHLL2}, ATM (ATM serine/threonine kinase) [NCBI Gene 472] {aka AT1, ATA, ATC, ATD, ATDC, ATE}, SPA1 (SPA (suppressor of phyA-105) protein family) [NCBI Gene 819242] {aka AT2G46350, F11C10.3, SUPPRESSOR OF PHYA-105 1}, RBX1 (RING-box 1) [NCBI Gene 832179] {aka ATRBX1, F7C8.160, F7C8_160, HRT1, REGULATOR OF CULLINS-1, RING-BOX 1}, SFTPA2 (surfactant protein A2) [NCBI Gene 729238] {aka COLEC5, ILD2, PSAP, PSP-A, PSPA, SFTP1}, MUL1 (mitochondrial E3 ubiquitin protein ligase 1) [NCBI Gene 79594] {aka C1orf166, GIDE, MAPL, MULAN, RNF218}, CUL4 (cullin4) [NCBI Gene 834663] {aka ATCUL4, MDE13.3, MDE13_3, cullin4}, PHYA (phytochrome A) [NCBI Gene 837483] {aka ELONGATED HYPOCOTYL 8, F14J9.23, F14J9_23, FAR RED ELONGATED 1, FAR RED ELONGATED HYPOCOTYL 2, FHY2}, COP8 (Proteasome component (PCI) domain protein) [NCBI Gene 834312] {aka ATS4, CONSTITUTIVE PHOTOMORPHOGENIC 14, CONSTITUTIVE PHOTOMORPHOGENIC 8, COP14, COP9 SIGNALOSOME SUBUNIT 4, CSN4}, SPA4 (SPA1-related 4) [NCBI Gene 841743] {aka F8L10.5, F8L10_5, SPA1-related 4}, SPA2 (SPA1-related 2) [NCBI Gene 826712] {aka SPA1-related 2, T22B4.90, T22B4_90}, TUA5 (tubulin alpha-5) [NCBI Gene 832098] {aka ALPHA TUBULIN, T29J13.200, tubulin alpha-5}
- **Chemicals:** NaCl (MESH:D012965), Lysis buffer (-), R (MESH:D001120), MG132 (MESH:C072553), nitrogen (MESH:D009584), Laemmli buffer (MESH:C088816), PVDF (MESH:C024865), EDTA (MESH:D004492), B (MESH:D001895), SDS (MESH:D012967), Triton X-100 (MESH:D017830), clasto-Lactacystin beta-lactone (MESH:C098869), ice (MESH:D007053), DTT (MESH:D004229), sucrose (MESH:D013395), glycerol (MESH:D005990), anthocyanin (MESH:D000872),  (MESH:D010834)
- **Species:** Nicotiana tabacum (American tobacco, species) [taxon 4097], Saccharomyces cerevisiae (baker's yeast, species) [taxon 4932], Homo sapiens (human, species) [taxon 9606], Oryza sativa (Asian cultivated rice, species) [taxon 4530], Arabidopsis thaliana (mouse-ear cress, species) [taxon 3702]
- **Mutations:** G380R, (D) for 4, G380R, Y242H, Y276H
- **Cell lines:** R — Homo sapiens (Human), Colon carcinoma, Cancer cell line (CVCL_RB18)

## Full text

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## Figures

10 figures with captions in the complete paper: https://tomesphere.com/paper/PMC4569408/full.md

## References

68 references — full list in the complete paper: https://tomesphere.com/paper/PMC4569408/full.md

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Source: https://tomesphere.com/paper/PMC4569408