# 1H, 13C, and 15N resonance assignments for the tandem PHD finger motifs of human CHD4

**Authors:** Louise J. Walport, Rosa Morra, Erika J. Mancini, Christina Redfield

PMC · DOI: 10.1007/s12104-014-9582-y · Biomolecular Nmr Assignments · 2014-10-18

## TL;DR

This paper provides detailed NMR resonance assignments for the tandem PHD finger motifs of the human CHD4 protein, aiding in understanding its structure and function in chromatin regulation.

## Contribution

The study presents the first comprehensive NMR resonance assignments for the tandem PHD finger motifs of CHD4.

## Key findings

- 1H, 13C, and 15N resonance assignments were achieved for the entire dPHD of CHD4.
- The assignments will enable structural and functional studies of the tandem PHD motif.
- The work supports future investigations into how CHD4 interacts with chromatin.

## Abstract

The plant homeodomain (PHD) zinc finger is a structural motif of about 40–60 amino acid residues found in many eukaryotic proteins that are involved in chromatin-mediated gene regulation. The human chromodomain helicase DNA binding protein 4 (CHD4) is a multi-domain protein that harbours, at its N-terminal end, a pair of PHD finger motifs (dPHD) connected by a ~30 amino acid linker. This tandem PHD motif is thought to be involved in targeting CHD4 to chromatin via its interaction with histone tails. Here we report the 1H, 13C and 15N backbone and side-chain resonance assignment of the entire dPHD by heteronuclear multidimensional NMR spectroscopy. These assignments provide the starting point for the determination of the structure, dynamics and histone-binding properties of this tandem domain pair.

## Linked entities

- **Genes:** CHD4 (chromodomain helicase DNA binding protein 4) [NCBI Gene 1108]
- **Proteins:** CHD4 (chromodomain helicase DNA binding protein 4)
- **Species:** Homo sapiens (taxon 9606)

## Full-text entities

- **Genes:** CHD5 (chromodomain helicase DNA binding protein 5) [NCBI Gene 26038] {aka CHD-5, PMNDS}, EGLN1 (egl-9 family hypoxia inducible factor 1) [NCBI Gene 54583] {aka C1orf12, ECYT3, HALAH, HIF-PH2, HIFPH2, HPH-2}, DNAH8 (dynein axonemal heavy chain 8) [NCBI Gene 1769] {aka ATPase, SPGF46, hdhc9}, EGLN2 (egl-9 family hypoxia inducible factor 2) [NCBI Gene 112398] {aka EIT-6, EIT6, HIF-PH1, HIFPH1, HPH-1, HPH-3}, SMARCA4 (SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4) [NCBI Gene 6597] {aka BAF190, BAF190A, BRG1, CSS4, MRD16, OTSC12}, CHD4 (chromodomain helicase DNA binding protein 4) [NCBI Gene 1108] {aka CHD-4, Mi-2b, Mi2-BETA, SIHIWES}, CHD3 (chromodomain helicase DNA binding protein 3) [NCBI Gene 1107] {aka Mi-2a, Mi2-ALPHA, SNIBCPS, ZFH}
- **Diseases:** dPHD (MESH:D010939), cancer (MESH:D009369), mental retardation (MESH:D008607), dermatomyositis-specific auto antigen (MESH:D003882), immunodeficiency (MESH:D007153)
- **Chemicals:** Tyr (MESH:D014443), Trp (MESH:D014364), imidazole (MESH:C029899), zinc (MESH:D015032), D2O (MESH:D017666), glutamine (MESH:D005973), 13Calpha (-), IPTG (MESH:D007544), H2O (MESH:D014867), 13)C (MESH:C000615229), proline (MESH:D011392), NaCl (MESH:D012965), ZnCl2 (MESH:C016837), asparagine (MESH:D001216), ZnSO4 (MESH:D019287), amides (MESH:D000577), Phe (MESH:D010649), cobalt (MESH:D003035), DTT (MESH:D004229), HCCH (MESH:D000114),  (MESH:C115323),  (MESH:D001324)
- **Species:** Homo sapiens (human, species) [taxon 9606], Escherichia coli (E. coli, species) [taxon 562]
- **Cell lines:** Rosetta (DE3)pLysS — Mus musculus (Mouse), Hybridoma (CVCL_B7HM)

## Full text

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## Figures

3 figures with captions in the complete paper: https://tomesphere.com/paper/PMC4568016/full.md

## References

17 references — full list in the complete paper: https://tomesphere.com/paper/PMC4568016/full.md

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Source: https://tomesphere.com/paper/PMC4568016