# Liquid demixing of intrinsically disordered proteins is seeded by poly(ADP-ribose)

**Authors:** Matthias Altmeyer, Kai J. Neelsen, Federico Teloni, Irina Pozdnyakova, Stefania Pellegrino, Merete Grøfte, Maj-Britt Druedahl Rask, Werner Streicher, Stephanie Jungmichel, Michael Lund Nielsen, Jiri Lukas

PMC · DOI: 10.1038/ncomms9088 · Nature Communications · 2015-08-19

## TL;DR

This paper shows that poly(ADP-ribose) helps disordered proteins form liquid-like structures at DNA damage sites, aiding early cellular responses.

## Contribution

The study reveals that PAR acts as a seed for liquid demixing of intrinsically disordered proteins in response to DNA damage.

## Key findings

- PAR induces rapid and reversible liquid demixing of intrinsically disordered proteins at DNA break sites.
- Electrostatic interactions between RGG repeats and PAR drive the demixing process.
- Aggregation-prone domains amplify PAR-seeded demixing, influencing early DNA damage responses.

## Abstract

Intrinsically disordered proteins can phase separate from the soluble intracellular space, and tend to aggregate under pathological conditions. The physiological functions and molecular triggers of liquid demixing by phase separation are not well understood. Here we show in vitro and in vivo that the nucleic acid-mimicking biopolymer poly(ADP-ribose) (PAR) nucleates intracellular liquid demixing. PAR levels are markedly induced at sites of DNA damage, and we provide evidence that PAR-seeded liquid demixing results in rapid, yet transient and fully reversible assembly of various intrinsically disordered proteins at DNA break sites. Demixing, which relies on electrostatic interactions between positively charged RGG repeats and negatively charged PAR, is amplified by aggregation-prone prion-like domains, and orchestrates the earliest cellular responses to DNA breakage. We propose that PAR-seeded liquid demixing is a general mechanism to dynamically reorganize the soluble nuclear space with implications for pathological protein aggregation caused by derailed phase separation.

Intrinsically disordered proteins can phase separate from the soluble intracellular space. Here the authors show that the nucleic acid-mimicking biopolymer poly(ADP-ribose) (PAR) nucleates intracellular liquid demixing and orchestrates the earliest cellular responses to DNA breakage.

## Full-text entities

- **Genes:** NLRP2 (NLR family pyrin domain containing 2) [NCBI Gene 55655] {aka CLR19.9, NALP2, NBS1, OZEMA18, PAN1, PYPAF2}, PRKDC (protein kinase, DNA-activated, catalytic subunit) [NCBI Gene 5591] {aka DNA-PKC, DNA-PKcs, DNAPK, DNAPKc, DNPK1, HYRC}, Parp1 (Poly-(ADP-ribose) polymerase 1) [NCBI Gene 3355109] {aka BEST:LD21673, CG17685, CG17696, CG17718, CG40411, D.PARP}, XRCC6 (X-ray repair cross complementing 6) [NCBI Gene 2547] {aka CTC75, CTCBF, G22P1, KU70, ML8, TLAA}, TAF15 (TATA-box binding protein associated factor 15) [NCBI Gene 8148] {aka Npl3, RBP56, TAF2N, TAFII68}, TP53BP1 (tumor protein p53 binding protein 1) [NCBI Gene 7158] {aka 53BP1, TDRD30, p202, p53BP1}, MDC1 (mediator of DNA damage checkpoint 1) [NCBI Gene 9656] {aka NFBD1}, IDH1 (isocitrate dehydrogenase (NADP(+)) 1) [NCBI Gene 3417] {aka HEL-216, HEL-S-26, IDCD, IDH, IDP, IDPC}, Parg (Poly(ADP-ribose) glycohydrolase) [NCBI Gene 31329] {aka CG2864, Dmel\CG2864, EG:114E2.1, HD10914, dParg}, PARG (poly(ADP-ribose) glycohydrolase) [NCBI Gene 8505] {aka PARG99}, ATM (ATM serine/threonine kinase) [NCBI Gene 472] {aka AT1, ATA, ATC, ATD, ATDC, ATE}, ATR (ATR checkpoint kinase) [NCBI Gene 545] {aka FCTCS, FRP1, MEC1, SCKL, SCKL1}, EWSR1 (EWS RNA binding protein 1) [NCBI Gene 2130] {aka EWS, EWS-FLI1}, PARP1 (poly(ADP-ribose) polymerase 1) [NCBI Gene 142] {aka ADPRT, ADPRT 1, ADPRT1, ARTD1, PARP, PARP-1}, SAFB (scaffold attachment factor B) [NCBI Gene 6294] {aka HAP, HET, SAB-B1, SAF-B, SAF-B1, SAFB1}, FUS (FUS RNA binding protein) [NCBI Gene 2521] {aka ALS6, ETM4, FUS1, HNRNPP2, POMP75, TLS}
- **Diseases:** sarcoma (MESH:D012509), LCD (MESH:C537881), PAR (MESH:C564422), FTLD (MESH:D057174), Cancer (MESH:D009369), neurodegeneration (MESH:D019636), parkinsonism (MESH:D010302), proteinopathies (MESH:D057165), ALS (MESH:D000690), Ewing sarcoma (MESH:D012512)
- **Species:** Bos taurus (bovine, species) [taxon 9913], Homo sapiens (human, species) [taxon 9606], Mus musculus (house mouse, species) [taxon 10090], Mycoplasma (genus) [taxon 2093], Drosophila melanogaster (fruit fly, species) [taxon 7227]
- **Mutations:** arginine to glutamate
- **Cell lines:** U-2-OS osteosarcoma — Homo sapiens (Human), Osteosarcoma, Cancer cell line (CVCL_F865), U-2-OS — Homo sapiens (Human), Osteosarcoma, Cancer cell line (CVCL_0042)

## Full text

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## Figures

9 figures with captions in the complete paper: https://tomesphere.com/paper/PMC4560800/full.md

## References

51 references — full list in the complete paper: https://tomesphere.com/paper/PMC4560800/full.md

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Source: https://tomesphere.com/paper/PMC4560800