# Association between CXCL10 and DPP4 Gene Polymorphisms and a Complementary Role for Unfavorable IL28B Genotype in Prediction of Treatment Response in Thai Patients with Chronic Hepatitis C Virus Infection

**Authors:** Kessarin Thanapirom, Sirinporn Suksawatamnuay, Wattana Sukeepaisarnjaroen, Pisit Tangkijvanich, Sombat Treeprasertsuk, Panarat Thaimai, Rujipat Wasitthankasem, Yong Poovorawan, Piyawat Komolmit

PMC · DOI: 10.1371/journal.pone.0137365 · PLoS ONE · 2015-09-04

## TL;DR

This study examines how genetic variations in CXCL10 and DPP4, along with IL28B, affect treatment outcomes in Thai patients with hepatitis C.

## Contribution

The study identifies a complementary role of CXCL10 polymorphisms in predicting treatment response for patients with unfavorable IL28B genotypes.

## Key findings

- The IL28B CC genotype is strongly associated with higher sustained virologic response rates in hepatitis C patients.
- CXCL10 polymorphisms complement IL28B in predicting treatment outcomes for genotype 1 patients with unfavorable IL28B genotypes.
- DPP4 gene polymorphisms do not significantly correlate with treatment response in genotype 1 patients.

## Abstract

Pretreatment serum levels of interferon-γ-inducible protein-10 (IP-10, CXCL10) and dipeptidyl peptidase-4 (DPP IV) predict treatment response in chronic hepatitis C (CHC). The association between functional genetic polymorphisms of CXCL10 and DPP4 and treatment outcome has not previously been studied. This study aimed to determine the association between genetic variations of CXCL10 and DPP4 and the outcome of treatment with pegylated interferon-α (PEG-IFN-α) based therapy in Thai patients with CHC. 602 Thai patients with CHC treated using a PEG-IFN-α based regimen were genotyped for CXCL10 rs56061981 G>A and IL28B rs12979860 C>T. In addition, in patients infected with CHC genotype 1, DPP4 (rs13015258 A>C, rs17848916 T>C, rs41268649 G>A, and rs 17574 T>C) were genotyped. Correlations between single nucleotide polymorphisms, genotype, and treatment response were analyzed. The rate of sustained virologic response (SVR) was higher for the CC genotype of IL28B rs12979860 polymorphisms than for non-CC in both genotype 1 (60.6% vs. 29.4%, P < 0.001) and non-genotype 1 (69.4% vs. 49.1%, P < 0.05) CHC. SVR was not associated with the CXCL10 gene variant in all viral genotypes or DPP4 gene polymorphisms in viral genotype1. Multivariate analysis revealed IL28B rs12979860 CC genotype (OR = 3.12; 95% CI, 1.72–5.67; P < 0.001), hepatitis C virus RNA < 400,000 IU/ml (OR = 2.21; 95% CI, 1.22–3.99, P < 0.05), age < 45 years (OR = 2.03; 95% CI, 1.11–3.68; P < 0.05), and liver fibrosis stage 0–1 (OR = 1.64; 95% CI, 1.01–2.65, P < 0.05) were independent factors for SVR. Unfavorable IL28B rs12979860 CT or TT genotypes with the CXCL10 rs56061981 non-GG genotype were associated with a higher SVR than GG genotype (66.7% vs. 33.0%, P = 0.004) in viral genotype 1. In Thai CHC genotype 1 infected patients with an unfavorable IL28B rs12979860 CT/TT genotype, the complementary CXCL10 polymorphism strongly enhances prediction of treatment response.

## Linked entities

- **Genes:** CXCL10 (C-X-C motif chemokine ligand 10) [NCBI Gene 3627], DPP4 (dipeptidyl peptidase 4) [NCBI Gene 1803], IFNL3 (interferon lambda 3) [NCBI Gene 282617]

## Full-text entities

- **Genes:** CXCL10 (C-X-C motif chemokine ligand 10) [NCBI Gene 3627] {aka C7, IFI10, INP10, IP-10, SCYB10, crg-2}, IFNL3 (interferon lambda 3) [NCBI Gene 282617] {aka IFN-lambda-3, IFN-lambda-4, IL-28B, IL-28C, IL28B, IL28C}, DPP4 (dipeptidyl peptidase 4) [NCBI Gene 1803] {aka ADABP, ADCP2, CD26, DPPIV, TP103}, CXCR3 (C-X-C motif chemokine receptor 3) [NCBI Gene 2833] {aka CD182, CD183, CKR-L2, CMKAR3, GPR9, IP10-R}, SLC17A5 (solute carrier family 17 member 5) [NCBI Gene 26503] {aka AST, ISSD, NSD, SD, SIALIN, SIASD}, GGT1 (gamma-glutamyltransferase 1) [NCBI Gene 2678] {aka CD224, D22S672, D22S732, GGT, GGT 1, GGTD}, ALPP (alkaline phosphatase, placental) [NCBI Gene 250] {aka ALP, PALP, PLAP, PLAP-1}, GPT (glutamic--pyruvic transaminase) [NCBI Gene 2875] {aka AAT1, ALT, ALT1, GPT1, SGPT}
- **Diseases:** anemia (MESH:D000740), hepatitis B virus infection (MESH:D006509), human immunodeficiency virus (MESH:D015658), obesity (MESH:D009765), genotype 1 infection (MESH:D007239), viral hepatitis C (MESH:D006525), cirrhosis (MESH:D005355), liver fibrosis (MESH:D008103), Diabetes Mellitus (MESH:D003920), end-stage renal disease (MESH:D007676), HCV genotype 1 infection (MESH:D006526), CHC (MESH:D019698), alcohol (MESH:D000437), chronic hepatitis B infection (MESH:D019694)
- **Species:** Homo sapiens (human, species) [taxon 9606], hepatitis C virus [taxon 11103]
- **Mutations:** rs 41268649, G>A, rs12979860, rs13015258, G>A, T>C, rs17848916, rs 17574, C>T, rs56061981, T>G, 17574 T>C, A>C, T>C, rs5606198, C>T

## Full text

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## Figures

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## References

35 references — full list in the complete paper: https://tomesphere.com/paper/PMC4560372/full.md

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Source: https://tomesphere.com/paper/PMC4560372