# Comprehensive metabolome analyses reveal N-acetylcysteine-responsive accumulation of kynurenine in systemic lupus erythematosus: implications for activation of the mechanistic target of rapamycin

**Authors:** Andras Perl, Robert Hanczko, Zhi-Wei Lai, Zachary Oaks, Ryan Kelly, Rebecca Borsuk, John M. Asara, Paul E. Phillips

PMC · DOI: 10.1007/s11306-015-0772-0 · Metabolomics · 2015-01-20

## TL;DR

This study finds that N-acetylcysteine reduces kynurenine levels in lupus patients, which may help control the disease by affecting metabolic pathways.

## Contribution

The study identifies kynurenine as an NAC-responsive metabolite linked to mTOR activation in lupus, offering new insights into lupus metabolism.

## Key findings

- Kynurenine is a top predictor of SLE and is significantly reduced by NAC treatment.
- Metabolome changes in lupus PBL show a strong impact on the pentose phosphate pathway.
- Kynurenine stimulates mTOR activity in healthy cells, suggesting a role in lupus pathogenesis.

## Abstract

Systemic lupus erythematosus (SLE) patients exhibit depletion of the intracellular antioxidant glutathione and downstream activation of the metabolic sensor, mechanistic target of rapamycin (mTOR). Since reversal of glutathione depletion by the amino acid precursor, N-acetylcysteine (NAC), is therapeutic in SLE, its mechanism of impact on the metabolome was examined within the context of a double-blind placebo-controlled trial. Quantitative metabolome profiling of peripheral blood lymphocytes (PBL) was performed in 36 SLE patients and 42 healthy controls matched for age, gender, and ethnicity of patients using mass spectrometry that covers all major metabolic pathways. mTOR activity was assessed by western blot and flow cytometry. Metabolome changes in lupus PBL affected 27 of 80 KEGG pathways at FDR p < 0.05 with most prominent impact on the pentose phosphate pathway (PPP). While cysteine was depleted, cystine, kynurenine, cytosine, and dCTP were the most increased metabolites. Area under the receiver operating characteristic curve (AUC) logistic regression approach identified kynurenine (AUC = 0.859), dCTP (AUC = 0.762), and methionine sulfoxide (AUC = 0.708), as top predictors of SLE. Kynurenine was the top predictor of NAC effect in SLE (AUC = 0.851). NAC treatment significantly reduced kynurenine levels relative to placebo in vivo (raw p = 2.8 × 10−7, FDR corrected p = 6.6 × 10−5). Kynurenine stimulated mTOR activity in healthy control PBL in vitro. Metabolome changes in lupus PBL reveal a dominant impact on the PPP that reflect greater demand for nucleotides and oxidative stress. The PPP-connected and NAC-responsive accumulation of kynurenine and its stimulation of mTOR are identified as novel metabolic checkpoints in lupus pathogenesis.

The online version of this article (doi:10.1007/s11306-015-0772-0) contains supplementary material, which is available to authorized users.

## Linked entities

- **Proteins:** MTOR (mechanistic target of rapamycin kinase)
- **Chemicals:** N-acetylcysteine (PubChem CID 12035), kynurenine (PubChem CID 846), cysteine (PubChem CID 594), cystine (PubChem CID 67678), cytosine (PubChem CID 597), dCTP (PubChem CID 65091), methionine sulfoxide (PubChem CID 158980)
- **Diseases:** systemic lupus erythematosus (MONDO:0007915)

## Full-text entities

- **Genes:** POTEF (POTE ankyrin domain family member F) [NCBI Gene 728378] {aka A26C1B, POTE2alpha, POTEACTIN}, TALDO1 (transaldolase 1) [NCBI Gene 6888] {aka TAL, TAL-H, TALDOR, TALH}, CD4 (CD4 molecule) [NCBI Gene 920] {aka CD4mut, IMD79, Leu-3, OKT4D, T4}, IL17A (interleukin 17A) [NCBI Gene 3605] {aka CTLA-8, CTLA8, IL-17, IL-17A, IL17, ILA17}, RPS6KB1 (ribosomal protein S6 kinase B1) [NCBI Gene 6198] {aka PS6K, S6K, S6K-beta-1, S6K1, STK14A, p70 S6KA}, FOXP3 (forkhead box P3) [NCBI Gene 50943] {aka AIID, DIETER, IPEX, JM2, PIDX, XPID}, IL2RA (interleukin 2 receptor subunit alpha) [NCBI Gene 3559] {aka CD25, IDDM10, IL2R, IMD41, TCGFR, p55}, EIF4EBP1 (eukaryotic translation initiation factor 4E binding protein 1) [NCBI Gene 1978] {aka 4E-BP1, 4EBP1, BP-1, PHAS-I}, MTOR (mechanistic target of rapamycin kinase) [NCBI Gene 2475] {aka FRAP, FRAP1, FRAP2, RAFT1, RAPT1, SKS}, IL4 (interleukin 4) [NCBI Gene 3565] {aka BCGF-1, BCGF1, BSF-1, BSF1, IL-4}, FAS (Fas cell surface death receptor) [NCBI Gene 355] {aka ALPS1A, APO-1, APT1, CD95, FAS1, FASTM}, SLTM (SAFB like transcription modulator) [NCBI Gene 79811] {aka Met}, CD8A (CD8 subunit alpha) [NCBI Gene 925] {aka CD8, CD8alpha, IMD116, Leu2, p32}
- **Diseases:** inflammatory (MESH:D007249), HCA (MESH:D011015), autoimmune inflammatory disease (MESH:D001327), Fatigue (MESH:D005221), Isles Lupus (MESH:D008180), DN (MESH:D005671), mitochondrial dysfunction (MESH:D028361), necrosis (MESH:D009336), organ damage (MESH:D000092124)
- **Chemicals:** Pentose phosphate (MESH:D010428), Pentose (MESH:D010429), 1-methyl-adenosine (MESH:C002230), dCTP (MESH:C024107), Phenylalanine (MESH:D010649), Trehalose 6-phosphate (MESH:C082722), Lu (MESH:D008187), inosine (MESH:D007288), Acetylphosphate (MESH:C011632), Flavone (MESH:C043562), sodium deoxycholate (MESH:D003840), guanosine (MESH:D006151), 2-Oxobutanoate (MESH:C005087), cytosine (MESH:D003596), sodium molybdate (MESH:C024687), N-Acetyl-glucosamine (MESH:D000117), Deoxyinosine (MESH:C012271), hypotaurine (MESH:C003949), dUTP (MESH:C027078), Pyrimidine (MESH:C030986), Cyclic AMP (MESH:D000242), Taurine (MESH:D013654), Indole-3-carboxylic acid (MESH:C012382), xanthurenic acid (MESH:C028330), ascorbate (MESH:D001205), R5P (MESH:C031626), Uracil (MESH:D014498), Quinolinate (MESH:D017378), Acetoacetate (MESH:C016635), Purine (MESH:C030985), reactive oxygen intermediates (MESH:D017382), Sedoheptulose 7-phosphate (MESH:C020495), Pyrophosphate (MESH:C107241), 3-Phosphoglycerate (MESH:C005156), Ethanolamine (MESH:D019856), leupeptin (MESH:C032854), sodium pyrophosphate (MESH:C003319), glucuronate (MESH:D020723), GDP (MESH:D006153), Erythrose 4-phosphate (MESH:C026959), pepstatin (MESH:C031375), thiamine (MESH:D013831), kynurenic acid (MESH:D007736), geranylgeranyl pyrophosphate (MESH:C002963), Glucosamine (MESH:D005944), GSH (MESH:D005978), Pyroglutamic acid (MESH:D011761), Methionine sulfoxide (MESH:C013111), Sedoheptulose 1,7-bisphosphate (MESH:C022079), carbamoyl phosphate (MESH:D002221), Glyoxylate (MESH:C031150), NaF (MESH:D012969), 2-Deoxyglucose-6-phosphate (MESH:C015785), Thr (MESH:D013912), sucrose (MESH:D013395), P-hydroxybenzoate (MESH:C038193), Shikimate 3-phosphate (MESH:C042786), AlexaFluor-647 (MESH:C569686), glycerol (MESH:D005990), bromophenol blue (MESH:D001978)
- **Species:** Mus musculus (house mouse, species) [taxon 10090], Homo sapiens (human, species) [taxon 9606]
- **Cell lines:** Jurkat — Homo sapiens (Human), Childhood T acute lymphoblastic leukemia, Cancer cell line (CVCL_0065)

## Full text

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## Figures

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## References

43 references — full list in the complete paper: https://tomesphere.com/paper/PMC4559110/full.md

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Source: https://tomesphere.com/paper/PMC4559110