# The Genome of Winter Moth (Operophtera brumata) Provides a Genomic Perspective on Sexual Dimorphism and Phenology

**Authors:** Martijn F.L. Derks, Sandra Smit, Lucia Salis, Elio Schijlen, Alex Bossers, Christa Mateman, Agata S. Pijl, Dick de Ridder, Martien A.M. Groenen, Marcel E. Visser, Hendrik-Jan Megens

PMC · DOI: 10.1093/gbe/evv145 · Genome Biology and Evolution · 2015-07-29

## TL;DR

The winter moth genome provides insights into sexual dimorphism and seasonal timing in this economically important insect.

## Contribution

The study presents the first reference genome of a geometrid moth, revealing genomic features related to sexual dimorphism and phenology.

## Key findings

- The winter moth genome is the largest sequenced Lepidopteran genome to date, with 16,912 predicted protein-coding genes.
- An expanded gene family potentially linked to female brachyptery was identified.
- Genes involved in the circadian clock mechanism were annotated as candidates for seasonal timing.

## Abstract

The winter moth (Operophtera brumata) belongs to one of the most species-rich families in Lepidoptera, the Geometridae (approximately 23,000 species). This family is of great economic importance as most species are herbivorous and capable of defoliating trees. Genome assembly of the winter moth allows the study of genes and gene families, such as the cytochrome P450 gene family, which is known to be vital in plant secondary metabolite detoxification and host-plant selection. It also enables exploration of the genomic basis for female brachyptery (wing reduction), a feature of sexual dimorphism in winter moth, and for seasonal timing, a trait extensively studied in this species. Here we present a reference genome for the winter moth, the first geometrid and largest sequenced Lepidopteran genome to date (638 Mb) including a set of 16,912 predicted protein-coding genes. This allowed us to assess the dynamics of evolution on a genome-wide scale using the P450 gene family. We also identified an expanded gene family potentially linked to female brachyptery, and annotated the genes involved in the circadian clock mechanism as main candidates for involvement in seasonal timing. The genome will contribute to Lepidopteran genomic resources and comparative genomics. In addition, the genome enhances our ability to understand the genetic and molecular basis of insect seasonal timing and thereby provides a reference for future evolutionary and population studies on the winter moth.

## Linked entities

- **Genes:** CYP71B9 (cytochrome P450, family 71, subfamily B, polypeptide 9) [NCBI Gene 814788]
- **Species:** Operophtera brumata (taxon 104452), Mus musculus (taxon 10090)

## Full-text entities

- **Genes:** cryptochrome 2 [NCBI Gene 100500922], Period [NCBI Gene 692522], Cul3 (Cullin 3) [NCBI Gene 34896] {aka BG:DS07851.2, CG11861, CG31829, CG42616, CUL-3, Cul-3}, 25396295 [NCBI Gene 25396295], 25396293 [NCBI Gene 25396293], 25396313 [NCBI Gene 25396313], 25396319 [NCBI Gene 25396319], 25396323 [NCBI Gene 25396323], 25396311 [NCBI Gene 25396311], 25396306 [NCBI Gene 25396306], 25396310 [NCBI Gene 25396310], 25396294 [NCBI Gene 25396294], 25396297 [NCBI Gene 25396297], 25396304 [NCBI Gene 25396304], 25396307 [NCBI Gene 25396307], 25396290 [NCBI Gene 25396290]
- **Diseases:** Wolbachia infection (MESH:D007239)
- **Species:** Heliconius melpomene (common postman, species) [taxon 34740], Nasonia vitripennis (jewel wasp, species) [taxon 7425], Melitaea cinxia (Glanville fritillary, species) [taxon 113334], Operophtera brumata (winter moth, species) [taxon 104452], Wolbachia (genus) [taxon 953], Acyrthosiphon pisum (pea aphid, species) [taxon 7029], Lygus hesperus (lygus bug, species) [taxon 30085], Drosophila melanogaster (fruit fly, species) [taxon 7227], Phthonandria atrilineata (mulberry looper, species) [taxon 339843], Apocheima cinerarius (species) [taxon 706528], Bombyx mori (domestic silkworm, species) [taxon 7091], Biston betularia (pepper-and-salt moth, species) [taxon 82595], Euchlaena irraria (species) [taxon 689077], Tribolium castaneum (red flour beetle, species) [taxon 7070], Culex pipiens (common house mosquito, species) [taxon 7175], Plutella xylostella (cabbage moth, species) [taxon 51655], Homo sapiens (human, species) [taxon 9606], Quercus robur (English oak, species) [taxon 38942], Apis mellifera (bee, species) [taxon 7460], Danaus plexippus (American monarch, species) [taxon 13037], Microplitis demolitor (species) [taxon 69319], Lepidoptera (moths & butterflies, order) [taxon 7088]
- **Cell lines:** S2 — Drosophila melanogaster (Fruit fly), Spontaneously immortalized cell line (CVCL_Z232)

## Full text

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## Figures

4 figures with captions in the complete paper: https://tomesphere.com/paper/PMC4558862/full.md

## References

101 references — full list in the complete paper: https://tomesphere.com/paper/PMC4558862/full.md

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Source: https://tomesphere.com/paper/PMC4558862