# How can EPR spectroscopy help to unravel molecular mechanisms of flavin-dependent photoreceptors?

**Authors:** Daniel Nohr, Ryan Rodriguez, Stefan Weber, Erik Schleicher

PMC · DOI: 10.3389/fmolb.2015.00049 · Frontiers in Molecular Biosciences · 2015-09-01

## TL;DR

This review explores how EPR spectroscopy can help understand the molecular mechanisms of light-sensitive proteins that contain flavin.

## Contribution

The paper introduces a modern EPR approach to map light-induced structural changes in flavin-dependent photoreceptors.

## Key findings

- EPR spectroscopy can reveal the photoreaction and signal transduction mechanisms of flavin-containing proteins.
- Mechanistic similarities and differences are identified among cryptochromes, LOV, and BLUF domains.
- Spin labeling combined with pulsed EPR enables detailed analysis of conformational changes in these proteins.

## Abstract

Electron paramagnetic resonance (EPR) spectroscopy is a well-established spectroscopic method for the examination of paramagnetic molecules. Proteins can contain paramagnetic moieties in form of stable cofactors, transiently formed intermediates, or spin labels artificially introduced to cysteine sites. The focus of this review is to evaluate potential scopes of application of EPR to the emerging field of optogenetics. The main objective for EPR spectroscopy in this context is to unravel the complex mechanisms of light-active proteins, from their primary photoreaction to downstream signal transduction. An overview of recent results from the family of flavin-containing, blue-light dependent photoreceptors is given. In detail, mechanistic similarities and differences are condensed from the three classes of flavoproteins, the cryptochromes, LOV (Light-oxygen-voltage), and BLUF (blue-light using FAD) domains. Additionally, a concept that includes spin-labeled proteins and examination using modern pulsed EPR is introduced, which allows for a precise mapping of light-induced conformational changes.

## Linked entities

- **Chemicals:** FAD (PubChem CID 643975)

## Full-text entities

- **Genes:** CIB1 (cryptochrome-interacting basic-helix-loop-helix 1) [NCBI Gene 829604] {aka T4L20.110, T4L20_110, cryptochrome-interacting basic-helix-loop-helix 1}, Crys (Crystallin) [NCBI Gene 34604] {aka CG16963, Cry, Dcy, DmelCry, Dmel\CG16963, c}, cry (cryptochrome) [NCBI Gene 42305] {aka CG3772, CRYPTOCHROME, DCry, Dm-CRY1, DmCRY, DmCRY1}, phr (photorepair) [NCBI Gene 35735] {aka C2PHR, CG11205, CG11205-PA, Dm CPD, Dmel\CG11205, Phl}, lncRNA:CR46393 (long non-coding RNA:CR46393) [NCBI Gene 54520467] {aka CR46393, Dmel\CR46393, cry}, CRY2 (cryptochrome 2) [NCBI Gene 839529] {aka AT-PHH1, ATCRY2, CRYPTOCHROME 2 APOPROTEIN, F19P19.14, F19P19_14, FHA}
- **Diseases:** PL (OMIM:614338), RP (MESH:C537238)
- **Chemicals:** pyrimidine (MESH:C030986), flavosemiquinone (MESH:C001636), FMN (MESH:D005486), xylene (MESH:D014992), pyrazine (MESH:D011719), H(3) (MESH:C012616), phenylalanine (MESH:D010649), N(5) (MESH:C031785), nitroxide (MESH:C039900), DTT (MESH:D004229), acid (MESH:D000143), H(9) (MESH:C044388), amino acid (MESH:D000596), flavin semiquinone (MESH:C029276), C (MESH:D002244), semiquinone radicals (MESH:C025232), flavin (MESH:C024132), methionine (MESH:D008715), hydrogen (MESH:D006859), water (MESH:D014867), FAD (MESH:D005182), S (MESH:D013455), nitrogen (MESH:D009584), isoalloxazine (MESH:C008173), 3FMNH+ (-), flavins (MESH:D005415), EDTA (MESH:D004492), glutamine (MESH:D005973), tyrosine radical (MESH:C408694), oxygen (MESH:D010100), H(6) (MESH:C003027), tyrosine (MESH:D014443), cysteine (MESH:D003545), Trp (MESH:D014364)
- **Species:** Avena sativa (cultivated oat, species) [taxon 4498], Adiantum capillus-veneris (maidenhair fern, species) [taxon 13818], Escherichia coli (E. coli, species) [taxon 562], Thermosynechococcus vestitus (species) [taxon 146786], Xenopus laevis (African clawed frog, species) [taxon 8355], Arabidopsis thaliana (mouse-ear cress, species) [taxon 3702], Cereibacter sphaeroides (species) [taxon 1063], Synechocystis sp. (species) [taxon 1143], Drosophila melanogaster (fruit fly, species) [taxon 7227]
- **Mutations:** tyrosine residue was replaced with phenylalanine, Arg63Lys, C450A, Val28Thr, Trp377, Asn37Cys, Trp375, Asn94Ala, Trp320Phe, Phe509, Gln50Ala, Ile39Val, F509A, Trp324, Trp375Phe, Trp400Phe, Leu82Ile, Tyr50Phe, Trp400, Asn425Cys, Trp377Phe, Trp324Phe, Asn425, Trp373Phe, Tyr50, Trp373, Trp320

## Full text

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## Figures

8 figures with captions in the complete paper: https://tomesphere.com/paper/PMC4555020/full.md

## References

134 references — full list in the complete paper: https://tomesphere.com/paper/PMC4555020/full.md

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Source: https://tomesphere.com/paper/PMC4555020