# Effect of Environmental Chemical Stress on Nuclear Noncoding RNA Involved in Epigenetic Control

**Authors:** Patrizio Arrigo, Alessandra Pulliero

PMC · DOI: 10.1155/2015/761703 · 2015-08-03

## TL;DR

This paper explores how environmental chemicals affect noncoding RNAs in the cell nucleus, which play a role in gene regulation and epigenetic control.

## Contribution

The paper provides a review and bioinformatics analysis of how chemical stressors influence nuclear noncoding RNA function and production.

## Key findings

- Chemical stressors can induce DNA damage and alter ncRNA production mechanisms.
- Short nuclear noncoding RNAs are influenced by environmental chemical signals.
- Nuclear ncRNAs are involved in transcriptional and epigenetic regulation.

## Abstract

In the last decade the role of noncoding RNAs (ncRNAs) emerges not only as key elements of posttranscriptional gene silencing, but also as important players of epigenetic regulation. New kind and new functions of ncRNAs are continuously discovered and one of their most important roles is the mediation of environmental signals, both physical and chemical. The activity of cytoplasmic short ncRNA is extensively studied, in spite of the fact that their function and role in the nuclear compartment are not yet completely unraveled. Cellular nucleus contains a multiplicity of long and short ncRNAs controlling at different levels transcriptional and epigenetic processes. In addition, some ncRNAs are involved in RNA editing and quality control. In this paper we review the existing knowledge dealing with how chemical stressors can influence the functionality of short nuclear ncRNAs. Furthermore, we perform bioinformatics analyses indicating that chemical environmental stressors not only induce DNA damage but also influence the mechanism of ncRNAs production and control.

## Full-text entities

- **Genes:** HNRNPK (heterogeneous nuclear ribonucleoprotein K) [NCBI Gene 3190] {aka AUKS, CSBP, HNRPK, TUNP}, AGO3 (argonaute RISC catalytic component 3) [NCBI Gene 192669] {aka EIF2C3}, GAS5 (growth arrest specific 5) [NCBI Gene 60674] {aka NCRNA00030, SNHG2}, GABPB1 (GA binding protein transcription factor subunit beta 1) [NCBI Gene 2553] {aka BABPB2, E4TF1, E4TF1-47, E4TF1-53, E4TF1B, GABPB}, DICER1 (dicer 1, ribonuclease III) [NCBI Gene 23405] {aka DCR1, Dicer, Dicer1e, GLOW, HERNA, K12H4.8-LIKE}, SNORA65 (small nucleolar RNA, H/ACA box 65) [NCBI Gene 26783] {aka RNU65, U65}, MIR22HG (MIR22 host gene) [NCBI Gene 84981] {aka C17orf91}, PIWIL4 (piwi like RNA-mediated gene silencing 4) [NCBI Gene 143689] {aka HIWI2, MIWI2}, PIWIL1 (piwi like RNA-mediated gene silencing 1) [NCBI Gene 9271] {aka CT80.1, HIWI, MIWI, PIWI}, NHLH1 (nescient helix-loop-helix 1) [NCBI Gene 4807] {aka HEN1, NSCL, NSCL1, bHLHa35}, H3P16 (H3 histone pseudogene 16) [NCBI Gene 644914] {aka H3.6, H3F3AP6, p21}, TP53 (tumor protein p53) [NCBI Gene 7157] {aka BCC7, BMFS5, LFS1, P53, TRP53}, nCRNA [NCBI Gene 54719], PIWIL2 (piwi like RNA-mediated gene silencing 2) [NCBI Gene 55124] {aka CT80, HILI, PIWIL1L, mili}, PIWIL3 (piwi like RNA-mediated gene silencing 3) [NCBI Gene 440822] {aka HIWI3}, CYTOR (cytoskeleton regulator RNA) [NCBI Gene 112597] {aka C2orf59, LINC00152, NCRNA00152}, AP2B1 (adaptor related protein complex 2 subunit beta 1) [NCBI Gene 163] {aka ADTB2, AP105B, AP2-BETA, CLAPB1}, SNHG15 (small nucleolar RNA host gene 15) [NCBI Gene 285958] {aka C7orf40, Linc-Myo1g, MYO1GUT}, Rasgrf1 (RAS protein-specific guanine nucleotide-releasing factor 1) [NCBI Gene 19417] {aka CDC25, CDC25Mm, Gnrp, Grf1, Grfbeta, P190-A}, IDI2 (isopentenyl-diphosphate delta isomerase 2) [NCBI Gene 91734] {aka IPPI2}
- **Diseases:** cancer (MESH:D009369), carcinogenesis (MESH:D063646), cytotoxicity (MESH:D064420)
- **Species:** Saccharomyces cerevisiae (baker's yeast, species) [taxon 4932], Homo sapiens (human, species) [taxon 9606], Drosophila melanogaster (fruit fly, species) [taxon 7227], Mus musculus (house mouse, species) [taxon 10090]
- **Cell lines:** HeLa — Homo sapiens (Human), Human papillomavirus-related endocervical adenocarcinoma, Cancer cell line (CVCL_0030)

## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC4538421/full.md

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Source: https://tomesphere.com/paper/PMC4538421