# Evaluation of genetic susceptibility of common variants in CACNA1D with schizophrenia in Han Chinese

**Authors:** Fanglin Guan, Lu Li, Chuchu Qiao, Gang Chen, Tinglin Yan, Tao Li, Tianxiao Zhang, Xinshe Liu

PMC · DOI: 10.1038/srep12935 · Scientific Reports · 2015-08-10

## TL;DR

This study investigates whether genetic variants in CACNA1D are linked to schizophrenia in Han Chinese but finds no significant association.

## Contribution

The study is the first to evaluate the genetic susceptibility of CACNA1D to schizophrenia in the Han Chinese population.

## Key findings

- No significant association was found between CACNA1D variants and schizophrenia in Han Chinese.
- Genotype and haplotype analyses showed consistent patterns across testing and validation datasets.
- CACNA1D is likely not a risk gene for schizophrenia in this population.

## Abstract

The heritability of schizophrenia (SCZ) has been estimated to be as high as 80%, suggesting that genetic factors may play an important role in the etiology of SCZ. Cav1.2 encoded by CACNA1C and Cav1.3 encoded by CACNA1D are dominant calcium channel-forming subunits of L-type Voltage-dependent Ca2+ channels, expressed in many types of neurons. The CACNA1C has been consistently found to be a risk gene for SCZ, but it is unknown for CACNA1D. To investigate the association of CACNA1D with SCZ, we designed a two-stage case-control study, including a testing set with 1117 cases and 1815 controls and a validation set with 1430 cases and 4295 controls in Han Chinese. A total of selected 97 tag single nucleotide polymorphisms (SNPs) in CACNA1D were genotyped, and single-SNP association, imputation analysis and gender-specific association analyses were performed in the two independent datasets. None was found to associate with SCZ. Further genotype and haplotype association analyses indicated a similar pattern in the two-stage study. Our findings suggested CACNA1D might not be a risk gene for SCZ in Han Chinese population, which add to the current state of knowledge regarding the susceptibility of CACNA1D to SCZ.

## Linked entities

- **Genes:** CACNA1D (calcium voltage-gated channel subunit alpha1 D) [NCBI Gene 776], CACNA1C (calcium voltage-gated channel subunit alpha1 C) [NCBI Gene 775]
- **Proteins:** CACNA1C (calcium voltage-gated channel subunit alpha1 C), CACNA1D (calcium voltage-gated channel subunit alpha1 D)
- **Diseases:** schizophrenia (MONDO:0005090)

## Full-text entities

- **Genes:** CREB1 (cAMP responsive element binding protein 1) [NCBI Gene 1385] {aka CREB, CREB-1}, CACNA1S (calcium voltage-gated channel subunit alpha1 S) [NCBI Gene 779] {aka CACNL1A3, CCHL1A3, CMYO18, CMYP18, Cav1.1, DHPRM}, CACNA1D (calcium voltage-gated channel subunit alpha1 D) [NCBI Gene 776] {aka CACH3, CACN4, CACNL1A2, CCHL1A2, Cav1.3, PASNA}, CACNA1C (calcium voltage-gated channel subunit alpha1 C) [NCBI Gene 775] {aka CACH2, CACN2, CACNA1C-IT2, CACNL1A1, CCHL1A1, CaV1.2}, CACNB2 (calcium voltage-gated channel auxiliary subunit beta 2) [NCBI Gene 783] {aka CAB2, CACNLB2, CAVB2, MYSB}, HAP1 (huntingtin associated protein 1) [NCBI Gene 9001] {aka HAP2, HIP5, HLP, hHLP1}, CACNA1F (calcium voltage-gated channel subunit alpha1 F) [NCBI Gene 778] {aka AIED, COD3, COD4, CORDX, CORDX3, CSNB2}, NFYB (nuclear transcription factor Y subunit beta) [NCBI Gene 4801] {aka CBF-A, CBF-B, HAP3, NF-YB}
- **Diseases:** mental diseases (MESH:D008607), depression (MESH:D003866), anxiety (MESH:D001007), attention-deficit/hyperactivity disorder (MESH:D001289), neurological disorders (MESH:D009461), DSM-IV Axis I disorder (MESH:C566610), DSM-IV (MESH:D006011), head injuries (MESH:D006259), personality disorders (MESH:D010554), SCZ (MESH:D012559), autism (MESH:D001321), central nervous system (CNS) disorders (MESH:D002493), major depressive disorder (MESH:D003865), Parkinson's disease (MESH:D010300), autism spectrum disorders (MESH:D000067877), bipolar disorder (MESH:D001714), psychoses (MESH:D011618), learning disabilities (MESH:D007859), Psychiatric (MESH:D001523),  (MESH:D020022)
- **Species:** Homo sapiens (human, species) [taxon 9606]
- **Mutations:** rs3774605, rs1006737, rs4687587, rs709323, rs3774530, rs3774458, rs3774601, rs1460118

## Full text

_Full body text omitted from this summary view._ Fetch the complete paper as Markdown: https://tomesphere.com/paper/PMC4530443/full.md

## Figures

2 figures with captions in the complete paper: https://tomesphere.com/paper/PMC4530443/full.md

## References

44 references — full list in the complete paper: https://tomesphere.com/paper/PMC4530443/full.md

---
Source: https://tomesphere.com/paper/PMC4530443