# Association of VH4-59 Antibody Variable Gene Usage with Recognition of an Immunodominant Epitope on the HIV-1 Gag Protein

**Authors:** Valentine U. Chukwuma, Mark D. Hicar, Xuemin Chen, Katherine J. Nicholas, Amanda Joyner, Spyros A. Kalams, Gary Landucci, Donald N. Forthal, Paul W. Spearman, James E. Crowe

PMC · DOI: 10.1371/journal.pone.0133509 · 2015-07-30

## TL;DR

This study shows that a specific antibody gene, VH4-59, is linked to non-functional antibodies against a key HIV protein, potentially explaining immune system distraction during infection.

## Contribution

The study identifies a molecular mechanism linking VH4-59 gene usage to non-functional anti-Gag antibodies in HIV.

## Key findings

- VH4-59-encoded antibodies target a linear epitope on the HIV-1 Gag p17 subunit.
- These antibodies do not neutralize HIV or enhance immune functions like ADCC or T cell reactivity.
- The epitope may divert B cell resources, contributing to immune evasion by HIV.

## Abstract

The human antibody response against HIV-1 infection recognizes diverse antigenic subunits of the virion, and includes a high level of antibodies to the Gag protein. We report here the isolation and characterization of a subset of Gag-specific human monoclonal antibodies (mAbs) that were prevalent in the antibody repertoire of an HIV-infected individual. Several lineages of Gag-specifc mAbs were encoded by a single antibody heavy chain variable region, VH4-59, and a representative antibody from this group designated mAb 3E4 recognized a linear epitope on the globular head of the p17 subunit of Gag. We found no evidence that mAb 3E4 exhibited any function in laboratory studies aimed at elucidating the immunologic activity, including assays for neutralization, Ab-dependent cell-mediated virus inhibition, or enhanced T cell reactivity caused by Gag-3E4 complexes. The findings suggest this immunodominant epitope in Gag protein, which is associated with VH4-59 germline gene usage, may induce a high level of B cells that encode binding but non-functional antibodies that occupy significant repertoire space following HIV infection. The studies define an additional specific molecular mechanism in the immune distraction activity of the HIV virion.

## Linked entities

- **Proteins:** gag (Pr55(Gag)), POLE3 (DNA polymerase epsilon 3, accessory subunit)

## Full-text entities

- **Genes:** CD14 (CD14 molecule) [NCBI Gene 929], ITIH4 (inter-alpha-trypsin inhibitor heavy chain 4) [NCBI Gene 3700] {aka GP120, H4P, IHRP, ITI-HC4, ITIHL1, PK-120}, NRSN1 (neurensin 1) [NCBI Gene 140767] {aka VMP, p24}, CD19 (CD19 molecule) [NCBI Gene 930] {aka B4, CVID3}, CD4 (CD4 molecule) [NCBI Gene 920] {aka CD4mut, IMD79, Leu-3, OKT4D, T4}, CD69 (CD69 molecule) [NCBI Gene 969] {aka AIM, BL-AC/P26, CLEC2C, EA1, GP32/28, MLR-3}, Env [NCBI Gene 155971], CD86 (CD86 molecule) [NCBI Gene 942] {aka B7-2, B7.2, B70, BU63, CD28LG2, CD86 v6}, TNF (tumor necrosis factor) [NCBI Gene 7124] {aka DIF, IMD127, TNF-alpha, TNFA, TNFSF2, TNLG1F}, IL2 (interleukin 2) [NCBI Gene 3558] {aka IL-2, TCGF, lymphokine}, FAM72B (family with sequence similarity 72 member B) [NCBI Gene 653820] {aka p17}, POLE3 (DNA polymerase epsilon 3, accessory subunit) [NCBI Gene 54107] {aka CHARAC17, CHRAC17, CHRAC2, YBL1, p17}, CD28 (CD28 molecule) [NCBI Gene 940] {aka IMD123, Tp44}, ITGA4 (integrin subunit alpha 4) [NCBI Gene 3676] {aka CD49D, IA4}, CD8A (CD8 subunit alpha) [NCBI Gene 925] {aka CD8, CD8alpha, IMD116, Leu2, p32}, CD40LG (CD40 ligand) [NCBI Gene 959] {aka CD154, CD40L, HIGM1, IGM, IMD3, T-BAM}, IL2RA (interleukin 2 receptor subunit alpha) [NCBI Gene 3559] {aka CD25, IDDM10, IL2R, IMD41, TCGFR, p55}, NDUFB3 (NADH:ubiquinone oxidoreductase subunit B3) [NCBI Gene 4709] {aka B12, CI-B12, MC1DN25}, IFNG (interferon gamma) [NCBI Gene 3458] {aka IFG, IFI, IMD69}, gag (Pr55(Gag)) [NCBI Gene 155030], PARP9 (poly(ADP-ribose) polymerase family member 9) [NCBI Gene 83666] {aka ARTD9, BAL, BAL1, MGC:7868}
- **Diseases:** infected (MESH:D007239), influenza (MESH:D007251), AIDS (MESH:D000163), lymphoma (MESH:D008223), AIDS-associated B-cell lymphoma (MESH:D016393), AIDS-associated (MESH:D016263), HIV infection (MESH:D015658), Antibody-dependent cell-mediated viral (MESH:D014777)
- **Chemicals:** p-nitrophenyl phosphate (MESH:C008644), penicillin (MESH:D010406), sodium carbonate (MESH:C005686), sucrose (MESH:D013395), D-PBS (MESH:C012939), polyacrylamide (MESH:C016679), HCL (MESH:D006851), Tween-20 (MESH:D011136), streptomycin (MESH:D013307), lipid (MESH:D008055), Cy5 (MESH:C085321), polybrene (MESH:D006583), trifluoroacetic acid (MESH:D014269), zeocin (MESH:C105427), acetonitrile (MESH:C032159), MgCl2 (MESH:D015636), HEPES (MESH:D006531), CO2 (MESH:D002245), hygromycin (MESH:C026273), Triton x 100 (MESH:D017830), paraformaldehyde (MESH:C003043), L-glutamine (MESH:D005973), SDS (MESH:D012967), doxycycline (MESH:D004318), puromycin (MESH:D011691), nitrogen (MESH:D009584), Coomassie blue (MESH:C048139), Bis-Tris (MESH:C026272), CA-183 (-), water (MESH:D014867), PBS (MESH:D007854),  (MESH:D016056)
- **Species:** Pseudovirus (genus) [taxon 186672], Escherichia coli (E. coli, species) [taxon 562], Qubevirus faecium (species) [taxon 39804], Mus musculus (house mouse, species) [taxon 10090], Rotavirus (genus) [taxon 10912], hepatitis C virus [taxon 11103], Human immunodeficiency virus 2 (no rank) [taxon 11709], Human immunodeficiency virus 1 (no rank) [taxon 11676], Homo sapiens (human, species) [taxon 9606]
- **Cell lines:** Jurkat — Homo sapiens (Human), Childhood T acute lymphoblastic leukemia, Cancer cell line (CVCL_0065), 293 F — Homo sapiens (Human), Transformed cell line (CVCL_6642), HeLa — Homo sapiens (Human), Human papillomavirus-related endocervical adenocarcinoma, Cancer cell line (CVCL_0030), VTF7-3 — Mus musculus (Mouse), Transformed cell line (CVCL_IW58), 293T — Homo sapiens (Human), Transformed cell line (CVCL_0063), T-Rex 293 — Homo sapiens (Human), Transformed cell line (CVCL_D585), CEM.NKR — Homo sapiens (Human), Childhood T acute lymphoblastic leukemia, Cancer cell line (CVCL_X622), HEK — Homo sapiens (Human), Transformed cell line (CVCL_0045), TZM-bl — Homo sapiens (Human), Human papillomavirus-related endocervical adenocarcinoma, Cancer cell line (CVCL_B478), NL4-3 — Neodiprion lecontei (Redheaded pine sawfly), Spontaneously immortalized cell line (CVCL_Z498), DH5alpha — Drosophila hydei (Fruit fly), Spontaneously immortalized cell line (CVCL_Z531)

## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC4520566/full.md

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Source: https://tomesphere.com/paper/PMC4520566