# Developmental disruptions underlying brain abnormalities in ciliopathies

**Authors:** Jiami Guo, Holden Higginbotham, Jingjun Li, Jackie Nichols, Josua Hirt, Vladimir Ghukasyan, E. S. Anton

PMC · DOI: 10.1038/ncomms8857 · Nature communications · 2016-01-24

## TL;DR

This paper explores how disruptions in primary cilia function during brain development lead to brain abnormalities in ciliopathies.

## Contribution

The study identifies specific roles of ciliopathy genes in mouse cortical development and links these to brain abnormalities in ciliopathies.

## Key findings

- Ciliopathy genes affect key stages of mouse cortical development, including progenitor development and neuronal migration.
- Disrupted developmental events are directly linked to brain abnormalities observed in ciliopathies.
- The study provides insights into the functions of ciliopathy genes in corticogenesis.

## Abstract

Primary cilia are essential conveyors of signals underlying major cell functions. Cerebral cortical progenitors and neurons have a primary cilium. The significance of cilia function for brain development and function is evident in the plethora of developmental brain disorders associated with human ciliopathies. Nevertheless, the role of primary cilia function in corticogenesis remains largely unknown. Here we delineate the functions of primary cilia in the construction of cerebral cortex and their relevance to ciliopathies, using a shRNA library targeting ciliopathy genes known to cause brain disorders, but whose roles in brain development are unclear. We used the library to query how ciliopathy genes affect distinct stages of mouse cortical development, in particular neural progenitor development, neuronal migration, neuronal differentiation, and early neuronal connectivity. Our results define the developmental functions of ciliopathy genes and delineate disrupted developmental events that are integrally related to the emergence of brain abnormalities in ciliopathies.

## Linked entities

- **Diseases:** ciliopathies (MONDO:0005308)
- **Species:** Mus musculus (taxon 10090)

## Full-text entities

- **Genes:** Pou3f3 (POU domain, class 3, transcription factor 3) [NCBI Gene 18993] {aka Brn-1, Brn1, HST011, Otf8, Skin1, urehr2}, Tbr1 (T-box brain transcription factor 1) [NCBI Gene 21375], NEUROG2 (neurogenin 2) [NCBI Gene 63973] {aka Atoh4, Math4A, NGN2, bHLHa8, ngn-2}, Tub (TUB bipartite transcription factor) [NCBI Gene 22141] {aka rd5}, TMEM216 (transmembrane protein 216) [NCBI Gene 51259] {aka HSPC244, RP98}, RHOA (ras homolog family member A) [NCBI Gene 387] {aka ARH12, ARHA, EDFAOB, RHO12, RHOH12}, IFT80 (intraflagellar transport 80) [NCBI Gene 57560] {aka ATD2, CFAP167, FAP167, SRTD2, WDR56}, BBS9 (Bardet-Biedl syndrome 9) [NCBI Gene 27241] {aka B1, C18, D1, PTHB1}, BBS12 (Bardet-Biedl syndrome 12) [NCBI Gene 166379] {aka C4orf24}, Bbs10 (Bardet-Biedl syndrome 10) [NCBI Gene 71769] {aka 1300007O09Rik}, INPP5E (inositol polyphosphate-5-phosphatase E) [NCBI Gene 56623] {aka CORS1, CPD4, JBTS1, MORMS, PPI5PIV, pharbin}, Ahi1 (Abelson helper integration site 1) [NCBI Gene 52906] {aka 1700015F03Rik, Ahi-1, D10Bwg0629e}, GPR166P (G protein-coupled receptor 166, pseudogene) [NCBI Gene 442206] {aka GPCR, PGR9}, Bbs1 (Bardet-Biedl syndrome 1) [NCBI Gene 52028] {aka D19Ertd609e}, BBS10 (Bardet-Biedl syndrome 10) [NCBI Gene 79738] {aka C12orf58}, BBS4 (Bardet-Biedl syndrome 4) [NCBI Gene 585], Kif7 (kinesin family member 7) [NCBI Gene 16576], Bbs7 (Bardet-Biedl syndrome 7) [NCBI Gene 71492] {aka 8430406N16Rik}, IFT80 (intraflagellar transport 80) [NCBI Gene 100515277], CNTN2 (contactin 2) [NCBI Gene 6900] {aka AXT, EPEO5, FAME5, TAG-1, TAX, TAX1}, RAP1A (RAP1A, member of RAS oncogene family) [NCBI Gene 5906] {aka C21KG, G-22K, KREV-1, KREV1, RAP1, SMGP21}, CDH2 (cadherin 2) [NCBI Gene 1000] {aka ACOGS, ADHD8, ARVD14, CD325, CDHN, CDw325}, Tmem216 (transmembrane protein 216) [NCBI Gene 68642] {aka 1110017C22Rik, 2810441K11Rik, 4921533J23Rik, A930021F15Rik}, Tctn2 (tectonic family member 2) [NCBI Gene 67978] {aka 4432405B04Rik, Tect2}, Shh (sonic hedgehog) [NCBI Gene 20423] {aka 9530036O11Rik, Dsh, HHG-1, Hhg1, Hx, Hxl3}, KIF3A (kinesin family member 3A) [NCBI Gene 11127] {aka FLA10, KLP-20}, BUB1B (BUB1 mitotic checkpoint serine/threonine kinase B) [NCBI Gene 102164975], Trim32 (tripartite motif-containing 32) [NCBI Gene 69807] {aka 1810045E12Rik, 3f3, BBS11, Zfp117}, KIF7 (kinesin family member 7) [NCBI Gene 100624604], SLIT2 (slit guidance ligand 2) [NCBI Gene 9353] {aka SLIL3, Slit-2}, Eomes (eomesodermin) [NCBI Gene 13813] {aka TBR-2, Tbr2}, BBS1 (Bardet-Biedl syndrome 1) [NCBI Gene 582] {aka BBS2L2}, Alms1 (ALMS1, centrosome and basal body associated) [NCBI Gene 236266] {aka bbb}, CTNNB1 (catenin beta 1) [NCBI Gene 395964] {aka CHBCAT, beta-catenin}, STK11 (serine/threonine kinase 11) [NCBI Gene 6794] {aka LKB1, PJS, hLKB1}, TCTN2 (tectonic family member 2) [NCBI Gene 79867] {aka C12orf38, JBTS24, MKS8, TECT2}, BUB1B (BUB1 mitotic checkpoint serine/threonine kinase B) [NCBI Gene 701] {aka BUB1beta, BUBR1, Bub1A, MAD3L, MVA1, SSK1}, Bbs12 (Bardet-Biedl syndrome 12) [NCBI Gene 241950] {aka Gm1805, Gm407, Gm721}, Nphp1 (nephronophthisis 1 (juvenile) homolog (human)) [NCBI Gene 53885], Bbs9 (Bardet-Biedl syndrome 9) [NCBI Gene 319845] {aka E130103I17Rik}, MARK2 (microtubule affinity regulating kinase 2) [NCBI Gene 2011] {aka EMK-1, EMK1, MRD76, PAR-1, Par-1b, Par1b}, PPIA (peptidylprolyl isomerase A) [NCBI Gene 5478] {aka CYPA, CYPH, HEL-S-69p}, TMEM216 (transmembrane protein 216) [NCBI Gene 100519467], CDK5 (cyclin dependent kinase 5) [NCBI Gene 1020] {aka LIS7, PSSALRE}, FOXG1 (forkhead box G1) [NCBI Gene 2290] {aka BF1, BF2, FHKL3, FKH2, FKHL1, FKHL2}, TTC8 (tetratricopeptide repeat domain 8) [NCBI Gene 123016] {aka BBS8, RP51}, Bub1b (BUB1B, mitotic checkpoint serine/threonine kinase) [NCBI Gene 12236] {aka BUBR1}, AHI1 (Abelson helper integration site 1) [NCBI Gene 54806] {aka AHI-1, JBTS3, ORF1, dJ71N10.1}, ARL13B (ARF like GTPase 13B) [NCBI Gene 200894] {aka ARL2L1, JBTS8}, KIF7 (kinesin family member 7) [NCBI Gene 374654] {aka ACLS, AGBK, HLS2, JBTS12, MMEDF, UNQ340}, SEMA3A (semaphorin 3A) [NCBI Gene 10371] {aka COLL1, HH16, Hsema-I, Hsema-III, SEMA1, SEMAD}, ARX (aristaless related homeobox) [NCBI Gene 170302] {aka CT121, EIEE1, ISSX, MRX29, MRX32, MRX33}, BBS2 (Bardet-Biedl syndrome 2) [NCBI Gene 583] {aka BBS, RP74}, Bcl11b (B cell leukemia/lymphoma 11B) [NCBI Gene 58208] {aka 9130430L19Rik, B630002E05Rik, BCL-11B, Ctip2, Rit1}, Dcx (doublecortin) [NCBI Gene 13193] {aka Dbct}, Rpgrip1l (Rpgrip1-like) [NCBI Gene 244585] {aka 1700047E16Rik, 4931437C01, Ftm, Nphp8}, IFT88 (intraflagellar transport 88) [NCBI Gene 8100] {aka D13S1056E, DAF19, TG737, TTC10, hTg737}, BBS5 (Bardet-Biedl syndrome 5) [NCBI Gene 129880], NTN1 (netrin 1) [NCBI Gene 9423] {aka MRMV4, NET1, NTN1L}, CUX1 (cut like homeobox 1) [NCBI Gene 1523] {aka CASP, CDP, CDP/Cut, CDP1, COY1, CUTL1}
- **Diseases:** Developmental disruptions (MESH:D019958), short-rib polydactyly type III (MESH:C537602), hydrocephalus (MESH:D006849), schizophrenia (MESH:D012559), BBSome ciliopathy (MESH:D000072661), hypoplasia (MESH:D000080344), Bardet-Biedl syndrome 1 (MESH:C537909), epilepsy (MESH:D004827), Jeune asphyxiating thoracic dystrophy (MESH:C537571), brain malformations (MESH:D020785), acallosal syndromes (MESH:D013577), Alstrom syndrome 1 (MESH:D056769), SRP type III (MESH:C536044), Neuronal migration defects (MESH:D054081), dysgenesis (MESH:C537048), BBS genes (MESH:D020788), premature chromatid separation syndrome (OMIM:176430), ectopias (MESH:C563268), neurodevelopmental defects (MESH:D065886), autism spectrum disorders (MESH:D000067877), hydrolethalus and acrocallosal syndromes (MESH:C536079), cortical abnormalities (MESH:D054220), polymicrogyria (MESH:D065706), microcephaly (MESH:D008831), Bardet-Biedl syndrome 10 (MESH:C565919), axonal fibre tract defects (MESH:D000071075), neurodevelopmental and psychiatric disorders (MESH:D001523), vaginal plug (MESH:D014627), axonal fasciculation (MESH:D005207), JBTS (MESH:C536293), aneuploidy (MESH:D000782), agenesis of the corpus callosum (MESH:D061085), neurodevelopmental diseases (MESH:D004194), Cortical heterotopias (MESH:D054091), intellectual disabilities (MESH:D008607), brain abnormalities (MESH:D001927), MKS (MESH:C536133), callosal agenesis (MESH:D058540), cortical deficits (MESH:D009461), cognitive deficits (MESH:D003072), neuronal (MESH:D009410), orofaciodigital (MESH:D009958)
- **Chemicals:** Lipofectamine 2000 (MESH:C086724), 4',6-diamidino-2-phenylindole (MESH:C007293), paraformaldehyde (MESH:C003043), CO2 (MESH:D002245), SYBR Green (MESH:C098022), P/S (MESH:D010758), streptomycin (MESH:D013307), F12 (MESH:C007782), 5-bromodeoxyuridine (MESH:D001973), agarose (MESH:D012685), penicillin (MESH:D010406), PBS (MESH:D007854), Citifluor (-), Triton X-100 (MESH:D017830), AlexaFluor 488 (MESH:C000711379)
- **Species:** Homo sapiens (human, species) [taxon 9606], Mus musculus (house mouse, species) [taxon 10090]
- **Cell lines:** IMCD3 — Mus musculus (Mouse), Transformed cell line (CVCL_0429), C57/ — Mus musculus (Mouse), Hybridoma (CVCL_A9KB)

## Full text

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## Figures

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## References

68 references — full list in the complete paper: https://tomesphere.com/paper/PMC4515781/full.md

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Source: https://tomesphere.com/paper/PMC4515781