# High-quality permanent draft genome sequence of the Parapiptadenia rigida-nodulating Cupriavidus sp. strain UYPR2.512

**Authors:** Sofie E De Meyer, Elena Fabiano, Rui Tian, Peter Van Berkum, Rekha Seshadri, TBK Reddy, Victor Markowitz, Natalia N Ivanova, Amrita Pati, Tanja Woyke, John Howieson, Nikos C Kyrpides, Wayne Reeve

PMC · DOI: 10.1186/1944-3277-10-13 · Standards in Genomic Sciences · 2015-04-11

## TL;DR

This paper presents the genome sequence of a bacteria strain that forms nodules on a Uruguayan plant, providing insights into its genetic makeup and function.

## Contribution

The novel contribution is the high-quality draft genome of Cupriavidus sp. UYPR2.512, isolated from Parapiptadenia rigida root nodules.

## Key findings

- The genome is 7,858,949 bp long and arranged in 365 scaffolds.
- It contains 7,411 protein-coding genes and 76 RNA-only encoding genes.
- The genome is part of the GEBA-RNB project proposal.

## Abstract

Cupriavidus sp. strain UYPR2.512 is an aerobic, motile, Gram-negative, non-spore-forming rod that was isolated from a root nodule of Parapiptadenia rigida grown in soils from a native forest of Uruguay. Here we describe the features of Cupriavidus sp. strain UYPR2.512, together with sequence and annotation. The 7,858,949 bp high-quality permanent draft genome is arranged in 365 scaffolds of 369 contigs, contains 7,411 protein-coding genes and 76 RNA-only encoding genes, and is part of the GEBA-RNB project proposal.

## Linked entities

- **Species:** Parapiptadenia rigida (taxon 148713)

## Full-text entities

- **Chemicals:** Lipid (MESH:D008055), tannins (MESH:D013634), CTAB (MESH:D000077286), Amino acid (MESH:D000596), Carbon (MESH:D002244), essential oil (MESH:D009822), -AC02-06NA25396 (-), Carbohydrate (MESH:D002241), N (MESH:D009584), Nucleotide (MESH:D009711), Oxygen (MESH:D010100)
- **Species:** Cupriavidus sp. amp6 (species) [taxon 388051], Mesorhizobium (genus) [taxon 68287], Peltophorum dubium (species) [taxon 191943], Azorhizobium (genus) [taxon 6], Mimosa pudica (sensitive-plant, species) [taxon 76306], Ensifer (genus) [taxon 106591], Cupriavidus sp. (species) [taxon 1873897], Rhizobium (genus) [taxon 379], Cupriavidus sp. UYPR2.512 (species) [taxon 1080187], Bacteria Latreille et al. 1825 (Bacteria stick insect, genus) [taxon 629395], Cupriavidus oxalaticus (species) [taxon 96344], Burkholderiales (order) [taxon 80840], Trifolium repens (creeping white clover, species) [taxon 3899], Parapiptadenia rigida (species) [taxon 148713], Bradyrhizobium (genus) [taxon 374], Medicago sativa (alfalfa, species) [taxon 3879], Burkholderia (genus) [taxon 32008], Hilaria rigida (species) [taxon 1245324], Mimosa (genus) [taxon 21013]

## Full text

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## Figures

3 figures with captions in the complete paper: https://tomesphere.com/paper/PMC4511410/full.md

## References

43 references — full list in the complete paper: https://tomesphere.com/paper/PMC4511410/full.md

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Source: https://tomesphere.com/paper/PMC4511410