# Two less common human microRNAs miR-875 and miR-3144 target a conserved site of E6 oncogene in most high-risk human papillomavirus subtypes

**Authors:** Lin Lin, Qingqing Cai, Xiaoyan Zhang, Hongwei Zhang, Yang Zhong, Congjian Xu, Yanyun Li

PMC · DOI: 10.1007/s13238-015-0142-8 · Protein & Cell · 2015-04-28

## TL;DR

Two human microRNAs, miR-875 and miR-3144, target a conserved site in the E6 oncogene of high-risk human papillomaviruses, potentially offering a new approach for suppressing cervical cancer.

## Contribution

Identification of miR-875 and miR-3144 as novel human microRNAs targeting a conserved E6 oncogene site in most high-risk HPV subtypes.

## Key findings

- miR-875 and miR-3144 target a conserved site in the E6 oncogene of high-risk HPVs but not low-risk HPVs.
- These miRNAs suppress E6 oncogene expression and inhibit cell growth in HPV16-positive cervical cancer cells.
- The target site overlaps with an alternative splice exon in viral early transcripts.

## Abstract

Human papillomaviruses (HPVs) including high-risk (HR) and low-risk (LR) subtypes have distinguishable variation on both genotypes and phenotypes. The co-infection of multiple HR-HPVs, headed by HPV16, is common in cervical cancer in female. Recently accumulating reports have focused on the interaction between virus and host, particularly the role of human microRNAs (miRNAs) in anti-viral defense by targeting viral genome. Here, we found a well-conserved target site of miRNAs in the genomes of most HR-HPVs, not LR-HPVs, by scanning all potential target sites of human miRNAs on 24 HPVs of unambiguous subtypes of risk. The site is targeted by two less common human miRNAs, miR-875 and miR-3144, and is located in E6 oncogene open reading frame (ORF) and overlap with the first alternative splice exon of viral early transcripts. In validation tests, miR-875 and miR-3144 were identified to suppress the target reporter activity markedly and inhibit the expression of both synthetically exogenous E6 and endogenous E6 oncogene. High level of two miRNAs can inhibit cell growth and promote apoptosis in HPV16-positive cervical cancer cells. This study provides a promising common target of miRNAs for most HR-HPVs and highlights the effects of two low expressed human miRNAs on tumour suppression.

## Linked entities

- **Genes:** e6 (E6 protein) [NCBI Gene 929651]
- **Diseases:** cervical cancer (MONDO:0002974)

## Full-text entities

- **Genes:** MIR375 (microRNA 375) [NCBI Gene 494324] {aka MIRN375, hsa-mir-375, miRNA375, mir-375}, MIR1299 (microRNA 1299) [NCBI Gene 100302167] {aka MIRN1299, hsa-mir-1299}, MIR26B (microRNA 26b) [NCBI Gene 407017] {aka MIRN26B, hsa-mir-26b, miR-26b}, MIR3665 (microRNA 3665) [NCBI Gene 100500861], MIR626 (microRNA 626) [NCBI Gene 693211] {aka MIRN626, hsa-mir-626}, MIR3144 (microRNA 3144) [NCBI Gene 100422951] {aka mir-3144}, MIR889 (microRNA 889) [NCBI Gene 100126345] {aka MIRN889, hsa-mir-889, mir-889}, MIR4282 (microRNA 4282) [NCBI Gene 100423005], H3P16 (H3 histone pseudogene 16) [NCBI Gene 644914] {aka H3.6, H3F3AP6, p21}, MIR32 (microRNA 32) [NCBI Gene 407036] {aka MIRN32, hsa-mir-32, miR-32, miRNA32}, EGFR (epidermal growth factor receptor) [NCBI Gene 1956] {aka ERBB, ERBB1, ERRP, HER1, NISBD2, NNCIS}, MIR203A (microRNA 203a) [NCBI Gene 406986] {aka MIR203, MIRN203, hsa-mir-203a, miR-203, miRNA203, mir-203a}, MIR302A (microRNA 302a) [NCBI Gene 407028] {aka MIRN302, MIRN302A, hsa-mir-302, mir-302a}, MIR122 (microRNA 122) [NCBI Gene 406906] {aka MIR122A, MIRN122, MIRN122A, hsa-mir-122, miRNA122, miRNA122A}, MIR875 (microRNA 875) [NCBI Gene 100126309] {aka MIRN875, hsa-mir-875}, MIR2355 (microRNA 2355) [NCBI Gene 100423036] {aka mir-2355}, MIR448 (microRNA 448) [NCBI Gene 554212] {aka MIRN448, hsa-mir-448, miRNA448}, ANXA5 (annexin A5) [NCBI Gene 308] {aka ANX5, CPB-I, ENX2, HEL-S-7, PP4, RPRGL3}, TP53 (tumor protein p53) [NCBI Gene 7157] {aka BCC7, BMFS5, LFS1, P53, TRP53}, MIR145 (microRNA 145) [NCBI Gene 406937] {aka MIRN145, miR-145, miRNA145}, 1489078 [NCBI Gene 1489078]
- **Diseases:** Papilloma virus (MESH:D010212), benign and malignant neoplasia (MESH:D009369), HR-HPV (MESH:D030361), RTCA (MESH:D000377), Cervical cancer (MESH:D002583), squamous cell carcinoma (MESH:D002294), clear cell renal cell cancer (MESH:D002292), invasive (MESH:D009361), pancreatic cancer (MESH:D010190), upper tract urothelial cancer (MESH:D014523), carcinogenesis (MESH:D063646), adenosquamous cell carcinoma (MESH:D018196), prostate cancer (MESH:D011471), HR-HPVs (MESH:D001734), lung cancer (MESH:D008175), LR- (MESH:D009800), colorectal cancer (MESH:D015179), retardation (MESH:D008607), HPVs infected (MESH:D007239)
- **Chemicals:** oligonucleotides (MESH:D009841), paraformaldehyde (MESH:C003043), ice (MESH:D007053), Lipofectamine 2000 (MESH:C086724), Hoechst 33258 (MESH:D006690), Hoechst (-), H2O (MESH:D014867), Nucleotide (MESH:D009711), PI (MESH:D011419), SYBR Green (MESH:C098022), CO2 (MESH:D002245)
- **Species:** Homo sapiens (human, species) [taxon 9606], Human immunodeficiency virus (species) [taxon 12721], HCV [taxon 11103], H1N1 subtype (serotype) [taxon 114727], Human immunodeficiency virus 1 (no rank) [taxon 11676], Human papillomavirus (species) [taxon 10566], Halorubrum sp. PV6 (species) [taxon 634157], Influenza A virus (no rank) [taxon 11320], Pyrobaculum filamentous virus 1 (no rank) [taxon 1805492], H5N1 subtype (serotype) [taxon 102793], Human papillomavirus 16 (serotype) [taxon 333760], Hepatitis B virus (no rank) [taxon 10407]
- **Mutations:** C-33A, C33-A
- **Cell lines:** SiHa — Homo sapiens (Human), Human papillomavirus-related cervical squamous cell carcinoma, Cancer cell line (CVCL_0032), C33A — Homo sapiens (Human), Human papillomavirus-independent cervical squamous cell carcinoma, Cancer cell line (CVCL_1094)

## Full text

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## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC4506288/full.md

## References

58 references — full list in the complete paper: https://tomesphere.com/paper/PMC4506288/full.md

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Source: https://tomesphere.com/paper/PMC4506288