# A Mutagenesis Assay for Reporter Gene Screening Using Partially Degenerate Oligonucleotides of the Tandems NNT and NNC

**Authors:** Huifen Xu, Cuilan Zhou, Andy K. Zhang, Wen Li, Jia Zhang, Kai Li

PMC · DOI: 10.1155/2015/950873 · 2015-06-18

## TL;DR

This paper introduces a new mutagenesis assay using specific DNA sequences to test how well a gene can tolerate mutations, which is important for biotechnology and drug development.

## Contribution

The novel mutagenesis assay uses NNT and NNC oligonucleotides to safely test gene mutability without causing harmful mutations.

## Key findings

- The NNT and NNC oligonucleotides prevent nonsense mutations and allow flexible insertion sizes.
- The ZeoR gene was confirmed to be highly tolerant to mutagenesis using this new assay.

## Abstract

Not all proteins are tolerable to mutations. Whether a specific protein can be a mutable target is of importance in the biotechnology and pharmaceutical industry. This study reported a novel mutagenesis assay using tandem NNT and NNC oligonucleotides to test the mutability of a candidate gene. These two tandem oligonucleotides avoid the risk of forming nonsense mutations and render flexibility of truncating or expanding the insertion size. As a reporter gene, ZeoR (zeocin resistance gene) was confirmed to have a high tolerance for mutagenesis by this new assay.

## Full-text entities

- **Genes:** CCR5 (C-C motif chemokine receptor 5) [NCBI Gene 1234] {aka CC-CKR-5, CCCKR5, CCR-5, CD195, CKR-5, CKR5}, GLB1 (galactosidase beta 1) [NCBI Gene 2720] {aka EBP, ELNR1, MPS4B}, TTC41P (tetratricopeptide repeat domain 41, pseudogene) [NCBI Gene 253724] {aka GNN, GNNP}, EGFR (epidermal growth factor receptor) [NCBI Gene 1956] {aka ERBB, ERBB1, ERRP, HER1, NISBD2, NNCIS}
- **Chemicals:** BaeI (-), ampicillin (MESH:D000667), zeocin (MESH:C105427), MgSO4 (MESH:D008278), NNN (MESH:C008655), Oligonucleotide (MESH:D009841)
- **Species:** Homo sapiens (human, species) [taxon 9606], Escherichia coli (E. coli, species) [taxon 562]
- **Mutations:** TCTGATTCTCCTTCTCTTCAT       6 ACTACTCCTTGTTCTGTTCTT, AACCACCACTCCACCTTCTGCCAC   15 CTTCATCGTCCTCCTCTTCCTGTTATT, AGTACTGATTATGTTAATCAT 4 AACATCTTCAGCGGCGACCGC, AGCTCCGACGACGGCTTCCCCTTC   7 TCTGTTACTGATCTTCCTATT, AACCACGACACCAACCGCAACTTC   12 GTTGGTTCTCGTCGTATTTGTGTT, CACTGCAGCCTCTCCAACTACTGC   11 GGTGATGTTCGTAGTAATCATGGT, CACACCCTCCGCCCCGGCACCTCC   10 GCTTATTCTCTTGTTGTTCGTCGT, AGCTCCGACGACGGCTTCCCCTTC   9 CCTGCTCGTCGTCGTCATCGT, AGCTCCCCCCCCAACTTCACCGAC   13 TCTCATGTTCCTGCTACTTGTCGTCTT

## Figures

3 figures with captions in the complete paper: https://tomesphere.com/paper/PMC4488517/full.md

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Source: https://tomesphere.com/paper/PMC4488517