# Unraveling CD8 lineage decisions reveals that functionally distinct CD8+ T cells are selected by different MHC-I thymic peptides

**Authors:** Miho Shinzawa, Nicole Ramos, Khanh Bui, William Hajjar, Assiatu Crossman, Xiongfong Chen, Margaret Cam, Yousuke Takahama, Alfred Singer

PMC · DOI: 10.1038/s41590-025-02411-4 · Nature Immunology · 2026-01-19

## TL;DR

This study shows that different MHC-I peptides in the thymus determine the functional fate of CD8+ T cells during their development.

## Contribution

The study introduces a novel mouse model to show how MHC-I peptide distribution in the thymus influences CD8+ T cell lineage decisions.

## Key findings

- β5t-peptides in the thymic cortex select cytotoxic CD8+ T cells.
- Nonβ5t-peptides throughout the thymus select helper or innate memory CD8+ T cells.
- Peptide-specific signaling duration determines CD8+ T cell function.

## Abstract

Thymocytes signaled by T cell antigen receptors to undergo positive selection acquire different functional fates while migrating through the thymus, but how this occurs remains uncertain. We now report that encoding CD8 co-receptors in both Cd4 and Cd8 gene loci modulates major histocompatibility complex (MHC-I) class I T cell antigen receptor signaling duration to generate all potential CD8+ T cell subsets. Strikingly, such mice revealed that functionally different CD8+ T cells are selected by different MHC-I thymic peptides. Thymocytes signaled by β5t-peptides produced by thymoproteasomes exclusively expressed in the thymic cortex invariably become cytotoxic CD8+ T cells indicating their signaling ceases when thymocytes leave the cortex; whereas thymocytes signaled by nonβ5t-peptides expressed throughout the thymus become either helper or innate memory CD8+ T cells because their signaling persists or recurs outside the cortex. Thus, it is because of their different thymic distributions that different MHC-I peptides select functionally different CD8+ T cells, integrating peptide specificity and CD8+ T cell function during positive selection and thymocyte migration.

Shinzawa et al. developed CD8Dual mice that express CD8 co-receptors from both Cd4 and Cd8 gene loci. Using this model they find that thymic distribution of major histocompatibility complex class I peptides influences lineage commitment and CD8+ T cell function.

## Linked entities

- **Genes:** CD4 (CD4 molecule) [NCBI Gene 920], CD8A (CD8 subunit alpha) [NCBI Gene 925]
- **Proteins:** CD8A (CD8 subunit alpha), MHC-I (BOLA class I histocompatibility antigen, alpha chain BL3-7)

## Full-text entities

- **Genes:** Cd4 (CD4 antigen) [NCBI Gene 12504] {aka L3T4, Ly-4}, Itgb5 (integrin beta 5) [NCBI Gene 16419] {aka ESTM23, [b]-5, [b]5, [b]5A, [b]5B, beta-5}
- **Diseases:** cytotoxic (MESH:D064420)
- **Species:** Mus musculus (house mouse, species) [taxon 10090]

## Full text

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## Figures

15 figures with captions in the complete paper: https://tomesphere.com/paper/PMC13043308/full.md

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Source: https://tomesphere.com/paper/PMC13043308