# Extracellular vesicle miR-93-5p cargo regulates glomerular endothelial cell damage in Alport syndrome

**Authors:** Charmi Dedhia, Valentina Villani, Xiaogang Hou, Paolo Neviani, Geremy Clair, Mohammadreza Kasravi, Cristina Grange, Paolo Cravedi, Paola Aguiari, Velia Alcala, Giuseppe Orlando, Xue-Ying Song, Jonathan E. Zuckerman, Roger E. De Filippo, Stefano Da Sacco, Sargis Sedrakyan, Benedetta Bussolati, Laura Perin

PMC · DOI: 10.1172/jci.insight.197643 · JCI Insight · 2026-03-23

## TL;DR

This study shows that miR-93-5p in extracellular vesicles from stem cells can help repair kidney damage in Alport syndrome by restoring endothelial cell function.

## Contribution

The study identifies miR-93-5p as a key cargo in extracellular vesicles that mediates their therapeutic effect in Alport syndrome.

## Key findings

- miR-93-5p is downregulated in glomerular endothelial cells during Alport syndrome progression.
- hAFSC-EVs restore kidney function by transferring miR-93-5p and regulating VEGFR1 and VEGFR2 signaling.
- Spatial transcriptomics confirmed that hAFSC-EVs reverse disease pathways in the glomerulus via miR-93-5p.

## Abstract

Modulation of miRNA expression in glomerular cells is associated with renal disease. Here, we investigated the role of miR-93-5p in mitigating glomerular damage in Alport syndrome and whether the disease-modifying activity of extracellular vesicles from human amniotic fluid stem cells (hAFSC-EVs) is mediated by their miR-93-5p cargo. We identified downregulation of miR-93-5p specifically in glomerular endothelial cells in Alport syndrome along disease progression. Silencing of miR-93-5p in hAFSC-EVs changed the transcriptomic and proteomic profile, regulating EV disease-modifying activity. Compared with naive hAFSC-EVs, silenced hAFSC-EVs did not rescue glomerular endothelial function in vitro and did not restore kidney function in vivo. We established that hAFSC-EVs regulate VEGFR1 and VEGFR2 signaling by miR-93-5p cargo transfer, highlighting that miR-93-5p can restore glomerular endothelial cell biology. Spatial transcriptomics analysis of hAFSC-EV–injected kidneys showed that these EVs can reverse pathways altered during disease progression by stimulating proregenerative processes, specifically in the glomerulus, by regulating miR-93-5p targets. Alteration of glomerular endothelial cell transcriptomics and miR-93-5p targets was also confirmed in biopsies of patients with Alport syndrome using spatial molecular imaging. We demonstrated the critical role of miR-93-5p in glomerular endothelial cells and the capability of hAFSC-EVs to regulate miR-93-5p and its targets in Alport syndrome.

miR-93-5p-specific human AFSC-EVs cargo restores glomerular endothelial function in Alport syndrome by modulating VEGFR signaling and by promoting glomerular repair.

## Linked entities

- **Genes:** FLT1 (fms related receptor tyrosine kinase 1) [NCBI Gene 2321], KDR (kinase insert domain receptor) [NCBI Gene 3791]
- **Diseases:** Alport syndrome (MONDO:0018965)

## Full-text entities

- **Genes:** PC (pyruvate carboxylase) [NCBI Gene 5091] {aka PCB}, Tnfrsf21 (tumor necrosis factor receptor superfamily, member 21) [NCBI Gene 94185] {aka DR6, TR7}, Nphs2 (nephrosis 2, podocin) [NCBI Gene 170484] {aka PDCN, SRN1}, COL4A5 (collagen type IV alpha 5 chain) [NCBI Gene 1287] {aka ASLN, ATS, ATS1, CA54}, Mir137 (microRNA 137) [NCBI Gene 387155] {aka Mirn137, mir-137, mmu-mir-137}, Cp (ceruloplasmin) [NCBI Gene 12870] {aka D3Ertd555e}, TEK (TEK receptor tyrosine kinase) [NCBI Gene 7010] {aka CD202B, GLC3E, TIE-2, TIE2, VMCM, VMCM1}, TGFB1 (transforming growth factor beta 1) [NCBI Gene 7040] {aka CAEND1, CED, DPD1, IBDIMDE, LAP, TGF-beta1}, Il17a (interleukin 17A) [NCBI Gene 16171] {aka Ctla-8, Ctla8, IL-17, IL-17A, Il17}, Podxl (podocalyxin-like) [NCBI Gene 27205] {aka Ly102, PC, PCLP-1, Pclp1, Podxl1}, Mir935 (microRNA 935) [NCBI Gene 104795667] {aka Gm23450, mmu-mir-935}, Col4a4 (collagen, type IV, alpha 4) [NCBI Gene 12829] {aka E130010M05Rik, [a]4(IV)}, Actb (actin, beta) [NCBI Gene 11461] {aka Actx, E430023M04Rik, beta-actin}, Scamp3 (secretory carrier membrane protein 3) [NCBI Gene 24045] {aka Sc3}, Cd9 (CD9 antigen) [NCBI Gene 12527] {aka Tspan29}, Mir9-3 (microRNA 9-3) [NCBI Gene 723968] {aka Mirn9-3, mir-9-3, mmu-mir-9-3}, IL32 (interleukin 32) [NCBI Gene 9235] {aka IL-32alpha, IL-32beta, IL-32delta, IL-32gamma, NK4, TAIF}, FLT1 (fms related receptor tyrosine kinase 1) [NCBI Gene 2321] {aka FLT, FLT-1, VEGFR-1, VEGFR1}, Tecr (trans-2,3-enoyl-CoA reductase) [NCBI Gene 106529] {aka 2410016D23Rik, A230102P12Rik, D17Ertd178e, Gpsn2, SC2}, Vim (vimentin) [NCBI Gene 22352], Itgb1 (integrin beta 1 (fibronectin receptor beta)) [NCBI Gene 16412] {aka 4633401G24Rik, CD29, Fnrb, Gm9863, gpIIa}, Scamp4 (secretory carrier membrane protein 4) [NCBI Gene 56214] {aka 2410022D05Rik, Sc4}, Il1 (interleukin 1 complex) [NCBI Gene 111343] {aka Il-1}, Fn1 (fibronectin 1) [NCBI Gene 14268] {aka E330027I09, Fn, Fn-1}, Mir432 (microRNA 432) [NCBI Gene 100316735] {aka mmu-mir-432}, FN1 (fibronectin 1) [NCBI Gene 2335] {aka CIG, ED-B, FINC, FN, FNZ, GFND}, Cadm2 (cell adhesion molecule 2) [NCBI Gene 239857] {aka 2900078E11Rik, 9330131D06, A830029E02Rik, Igdf4d, Igsf4d, NECL3}, MPG (N-methylpurine DNA glycosylase) [NCBI Gene 4350] {aka AAG, ADPG, APNG, CRA36.1, MDG, PIG11}, Mir16-1 (microRNA 16-1) [NCBI Gene 387134] {aka Mirn16, Mirn16-1, miR-16, mir-16-1}, Cdkn1c (cyclin dependent kinase inhibitor 1C) [NCBI Gene 12577] {aka CDKI, Kip2, p57(kip2), p57Kip2}, MIR935 (microRNA 935) [NCBI Gene 100126325] {aka MIRN935, hsa-mir-935, mir-935}, Nphs1 (nephrosis 1, nephrin) [NCBI Gene 54631] {aka NephrinB, nephrin}, Pdgfra (platelet derived growth factor receptor, alpha polypeptide) [NCBI Gene 18595] {aka CD140a, Pdgfr-2}, Col4a5 (collagen, type IV, alpha 5) [NCBI Gene 12830], Wnk1 (WNK lysine deficient protein kinase 1) [NCBI Gene 232341] {aka 6430573H23Rik, EG406236, Hsn2, Prkwnk1, mKIAA0344}, Mir29b-2 (microRNA 29b-2) [NCBI Gene 723963] {aka Mirn29b-2, mir-29b-2}, FGF13 (fibroblast growth factor 13) [NCBI Gene 2258] {aka DEE90, FGF-13, FGF2, FHF-2, FHF2, LINC00889}, Scq1 (spinal cord QTL 1) [NCBI Gene 100036150] {aka SC1}, VEGFA (vascular endothelial growth factor A) [NCBI Gene 7422] {aka L-VEGF, MVCD1, VEGF, VPF}, MIR9-3 (microRNA 9-3) [NCBI Gene 407051] {aka MIRN9-3, hsa-mir-9-3, miRNA9-3, mir-9-3}, Mmp2 (matrix metallopeptidase 2) [NCBI Gene 17390] {aka Clg4a, GelA, MMP-2}, CD34 (CD34 molecule) [NCBI Gene 947], Vegfa (vascular endothelial growth factor A) [NCBI Gene 22339] {aka L-VEGF, Vegf, Vpf}, Cd63 (CD63 antigen) [NCBI Gene 12512] {aka ME491, Tspan30}, Srpx2 (sushi-repeat-containing protein, X-linked 2) [NCBI Gene 68792] {aka 1110039C07Rik, SRP, SRPUL}, Tgfbr2 (transforming growth factor, beta receptor II) [NCBI Gene 21813] {aka 1110020H15Rik, DNIIR, RIIDN, TBR-II, TbetaR-II, TbetaRII}, Wt1 (WT1 transcription factor) [NCBI Gene 22431] {aka D630046I19Rik, Wt-1}, Fbn1 (fibrillin 1) [NCBI Gene 14118] {aka B430209H23, Fib-1, Tsk}, Flt1 (FMS-like tyrosine kinase 1) [NCBI Gene 14254] {aka Flt-1, VEGFR-1, VEGFR1, sFlt1}, Ehd3 (EH-domain containing 3) [NCBI Gene 57440] {aka Ehd2}, COL4A3 (collagen type IV alpha 3 chain) [NCBI Gene 1285] {aka ATS2, ATS3, ATS3A, ATS3B, BFH2}, Mir10b (microRNA 10b) [NCBI Gene 387144] {aka Mirn10b, mir-10b, mmu-mir-10b}, Alb (albumin) [NCBI Gene 11657] {aka Alb-1, Alb1, BCL001, BCL002, BPL001}, SLC5A2 (solute carrier family 5 member 2) [NCBI Gene 6524] {aka SGLT2}, Cd81 (CD81 antigen) [NCBI Gene 12520] {aka Tapa-1, Tapa1, Tspan28}, Kdr (kinase insert domain protein receptor) [NCBI Gene 16542] {aka 6130401C07, Flk-1, Flk1, Krd-1, Ly73, VEGFR-2}, Col4a3 (collagen, type IV, alpha 3) [NCBI Gene 12828] {aka [a]3(IV), alpha3(IV)}, COL4A4 (collagen type IV alpha 4 chain) [NCBI Gene 1286] {aka ATS2, BFH, BFH1, CA44}, Itgb8 (integrin beta 8) [NCBI Gene 320910] {aka 4832412O06Rik, D630049N15}, KDR (kinase insert domain receptor) [NCBI Gene 3791] {aka CD309, FLK1, VEGFR, VEGFR2}
- **Diseases:** hyperglycemic (MESH:D006944), end-stage renal disease (MESH:D007676), IgA nephropathy (MESH:D005922), endothelial (MESH:D005642), arteriolosclerosis (MESH:D050379), glomerular disease (MESH:D007674), death (MESH:D003643), CKD (MESH:D051436), kidney failure (MESH:D051437), infectious diseases (MESH:D003141), WT (MESH:D009396), AS (MESH:D009394), fibrosis (MESH:D005355), acute myocardial infarction (MESH:D009203), GECs (MESH:D009081), Proteinuria (MESH:D011507)
- **Chemicals:** lipid (MESH:D008055), DAPI (MESH:C007293), lipofectamine (MESH:C086724), alpha-amanitin (MESH:D053959), Deep Red (-), fluorescein (MESH:D019793), puromycin (MESH:D011691), sparsentan (MESH:C000634424), H&amp;E (MESH:D006371), creatinine (MESH:D003404), paraffin (MESH:D010232)
- **Species:** Homo sapiens (human, species) [taxon 9606], Bos taurus (bovine, species) [taxon 9913], Mus musculus (house mouse, species) [taxon 10090]
- **Cell lines:** A2263-1MG — Trichoplusia ni (Cabbage looper), Spontaneously immortalized cell line (CVCL_Z093), hAFSC — Homo sapiens (Human), Adult hepatocellular carcinoma, Cancer cell line (CVCL_VN30), C57BL/6J — Mus musculus (Mouse), Transformed cell line (CVCL_C0MW)

## Full text

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## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC13043101/full.md

## References

66 references — full list in the complete paper: https://tomesphere.com/paper/PMC13043101/full.md

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Source: https://tomesphere.com/paper/PMC13043101