# Acid Ceramidase Inhibition Disrupts Ceramide Homeostasis and Induces Mitochondrial Apoptosis in IDH1-Mutant Oligodendroglioma

**Authors:** Mioara Larion, Helena Muley, Faris Zaibaq, Meili Zhang, Dionne Davis, Michael Kruhlak, Samarth Mathur, Adrian Lita, Hua Song, Wei Zhang, Zalman Wong, Taylor Harmon, Lumin Zhang, Chen Cam-El Makranz, Aiguo Li, George Karadimov, Fengchao Lang, Christel Herold-Mende, Chunzhang Yang, Tyrone Dowdy

PMC · DOI: 10.21203/rs.3.rs-9077389/v1 · Research Square · 2026-03-25

## TL;DR

Inhibiting acid ceramidase increases ceramide levels and triggers cell death in IDH1-mutant oligodendroglioma, offering a potential new treatment.

## Contribution

This study identifies acid ceramidase inhibition as a novel therapeutic strategy for IDH1-mutant oligodendroglioma by exploiting pre-existing ceramide stress.

## Key findings

- Acid ceramidase inhibition increases ceramide levels and induces mitochondrial apoptosis in IDH1-mutant oligodendroglioma cells.
- Pharmacologic inhibition with SABRAC preferentially reduces viability in IDH1-mutant cell lines.
- Ceramide elevation activates endoplasmic reticulum stress and unfolded protein response signaling.

## Abstract

Oligodendroglioma is genetically defined by mutations in isocitrate dehydrogenase 1 or 2 (IDH1/IDH2) and 1p/19q codeletion. We previously showed that in IDH1-mutant oligodendroglioma, the oncometabolite D-2-hydroxyglutarate biases the sphingosine-1-phosphate–to–ceramide rheostat toward ceramides. Taking advantage of this intrinsic metabolic vulnerability, we investigated whether further elevating ceramide levels through inhibition of acid ceramidase could exacerbate this imbalance and promote apoptotic cell death.

Analysis of patient datasets demonstrated that acid ceramidase is expressed at higher levels in both low- and high-grade gliomas compared with normal tissue. Pharmacologic inhibition of acid ceramidase with SABRAC preferentially reduced viability in human IDH1-mutant oligodendroglioma cell lines. In these sensitive models, acid ceramidase inhibition markedly increased ceramide levels and induced coordinated sphingolipid remodeling. Subcellular imaging using a fluorescent ceramide analogue demonstrated increased ceramide localization to lysosomes and mitochondria following acid ceramidase inhibition. This was accompanied by cytochrome c redistribution, executioner caspase activation, and caspase-dependent apoptotic cell death, consistent with engagement of intrinsic mitochondrial apoptosis. Transcriptomic and biochemical analyses further revealed activation of endoplasmic reticulum stress and unfolded protein response signaling, including PERK- and IRE1α-associated programs, suggesting coordinated multi-organelle stress responses under sustained ceramide elevation. These mechanistic effects translated into a survival benefit in oligodendroglioma xenograft-bearing mice.

Together, these findings suggest that IDH1-mutant oligodendroglioma harbors a pre-existing heightened sensitivity to ceramide stress and identify acid ceramidase as a therapeutically actionable target in this disease.

## Linked entities

- **Genes:** IDH1 (isocitrate dehydrogenase (NADP(+)) 1) [NCBI Gene 3417], IDH2 (isocitrate dehydrogenase (NADP(+)) 2) [NCBI Gene 3418]
- **Proteins:** Cyt-c-d (Cytochrome c distal), EIF2AK3 (eukaryotic translation initiation factor 2 alpha kinase 3), ERN1 (endoplasmic reticulum to nucleus signaling 1)
- **Chemicals:** D-2-hydroxyglutarate (PubChem CID 439391), sphingosine-1-phosphate (PubChem CID 5283560), ceramide (PubChem CID 139583739), SABRAC (PubChem CID 89350394)
- **Diseases:** oligodendroglioma (MONDO:0002540)

## Full-text entities

- **Genes:** ERN1 (endoplasmic reticulum to nucleus signaling 1) [NCBI Gene 2081] {aka IRE1, IRE1P, IRE1a, hIRE1p}, EIF2AK3 (eukaryotic translation initiation factor 2 alpha kinase 3) [NCBI Gene 9451] {aka PEK, PERK, WRS}, IDH1 (isocitrate dehydrogenase (NADP(+)) 1) [NCBI Gene 3417] {aka HEL-216, HEL-S-26, IDCD, IDH, IDP, IDPC}, IDH2 (isocitrate dehydrogenase (NADP(+)) 2) [NCBI Gene 3418] {aka D2HGA2, ICD-M, IDH, IDH-2, IDHM, IDP}, CYCS (cytochrome c, somatic) [NCBI Gene 54205] {aka CYC, HCS, THC4}, ASAH1 (N-acylsphingosine amidohydrolase 1) [NCBI Gene 427] {aka AC, ACDase, ASAH, PHP, PHP32, SMAPME}
- **Diseases:** gliomas (MESH:D005910), Oligodendroglioma (MESH:D009837)
- **Chemicals:** SABRAC (-), D-2-hydroxyglutarate (MESH:C019417), sphingosine-1-phosphate (MESH:C060506), Ceramide (MESH:D002518), sphingolipid (MESH:D013107)
- **Species:** Mus musculus (house mouse, species) [taxon 10090], Homo sapiens (human, species) [taxon 9606]

## Full text

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## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC13042195/full.md

## References

44 references — full list in the complete paper: https://tomesphere.com/paper/PMC13042195/full.md

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Source: https://tomesphere.com/paper/PMC13042195