# Deciphering the multidrug resistance paradigm in Candida auris

**Authors:** Darian J. Santana, Nicholas C. Cauldron, P. David Rogers, Christina A. Cuomo

PMC · DOI: 10.1128/aac.01062-24 · Antimicrobial Agents and Chemotherapy · 2026-03-16

## TL;DR

This paper explores the mechanisms behind antifungal resistance in Candida auris and proposes a refined model to guide treatment strategies.

## Contribution

The paper introduces a refined model of C. auris drug resistance by analyzing distinct resistance patterns for each antifungal class.

## Key findings

- Fluconazole resistance is driven by drug target mutations and diverse mutations in drug efflux regulators.
- Resistance to echinocandins, amphotericin B, and flucytosine is rare but can emerge through conserved mechanisms.
- Higher amphotericin B resistance in C. auris compared to other Candida species remains poorly understood.

## Abstract

Candida auris has garnered substantial clinical and public health attention for its widespread antifungal resistance. Most isolates are resistant to fluconazole, and many, to other drug classes, with acquired resistance to all clinically available antifungal drugs reported. Antifungal resistance is rising alongside increasing case counts, threatening a sparse antifungal toolbox with multidrug and pan-resistant isolates that may cause untreatable infections. In this minireview, we examine the recent literature investigating the mechanisms and evolutionary patterns of resistance in clinical isolates of C. auris to each antifungal utilized to combat these infections. We propose a refined model of C. auris drug resistance by separating the multidrug resistance paradigm into distinct resistance challenges for each drug class. We examine how the emergence of unique resistance patterns to each drug may suggest therapeutic options even for currently available antifungals. Resistance to fluconazole is driven by drug target mutations with clade-specific representation and more diverse acquired mutations in drug efflux regulators. Recent structural insights into the context of these mutations may suggest vulnerabilities to other triazoles even in fluconazole-resistant strains. Acquired resistance to echinocandins, amphotericin B, and the pyrimidine analog flucytosine is rare but can emerge under antifungal therapy through conserved resistance mechanisms. The reportedly higher amphotericin B resistance rate in C. auris relative to other Candida species remains poorly understood and may be linked to unexplored intrinsic resistance mechanisms. We suggest that close examination and further investigation of these mechanisms may inform better therapeutic practice and may offer treatment solutions for this multidrug-resistant pathogen.

## Linked entities

- **Chemicals:** fluconazole (PubChem CID 3365), amphotericin B (PubChem CID 1972), flucytosine (PubChem CID 3366)

## Full-text entities

- **Genes:** RHO1 (Rho family GTPase RHO1) [NCBI Gene 856294], FKS1 (1,3-beta-D-glucan synthase) [NCBI Gene 851055] {aka CND1, CWH53, ETG1, GSC1, PBR1}
- **Diseases:** fungal (MESH:D009181), Candida infection (MESH:D007239), ECHINOCANDIN RESISTANCE (MESH:D060467), candidemia (MESH:D058387), toxicity (MESH:D064420), bone marrow toxicity (MESH:D001855), candidiasis (MESH:D002177), hemolytic (MESH:D006461), urinary tract infections (MESH:D014552), acute kidney injury (MESH:D058186), C. auris (MESH:C000656864)
- **Chemicals:** imidazole (MESH:C029899), fatty acid (MESH:D005227), Pyrimidine (MESH:C030986), deoxycholate (MESH:D003840), hydrogen (MESH:D006859), rezafungin (MESH:C000629634), sulfate (MESH:D013431), Azole (MESH:D001393), 5-fluoro-deoxy-UMP (-), cholesterol (MESH:D002784), Amphotericin B (MESH:D000666), Itraconazole (MESH:D017964), imidazoles (MESH:D007093), caspofungin (MESH:D000077336), homotyrosine (MESH:C000711887), posaconazole (MESH:C101425), lipid (MESH:D008055), Polyene (MESH:D011090), ferric ion (MESH:D007501), amphotericin B deoxycholate (MESH:C059765), lanosterol (MESH:D007810), cytosine (MESH:D003596), Echinocandins (MESH:D054714), Isavuconazole (MESH:C508735), ergosterol (MESH:D004875), Anidulafungin (MESH:D000077612), Ibrexafungerp (MESH:C569338), amino acids (MESH:D000596), macrolide (MESH:D018942), erythromycin (MESH:D004917), reactive oxygen species (MESH:D017382), Voriconazole (MESH:D065819), water (MESH:D014867), sterol (MESH:D013261), heme (MESH:D006418), polyol (MESH:C024617), FR901379 (MESH:C110368), manogepix (MESH:C570438), nitrogen (MESH:D009584), micafungin (MESH:D000077551), triazole (MESH:D014230), Fluconazole (MESH:D015725), Flucytosine (MESH:D005437), 1,2,4-triazole (MESH:C045575)
- **Species:** Bacteria Latreille et al. 1825 (Bacteria stick insect, genus) [taxon 629395], Candidozyma haemuli (species) [taxon 45357], Mus musculus (house mouse, species) [taxon 10090], Candida albicans (species) [taxon 5476], Homo sapiens (human, species) [taxon 9606], Candidozyma auris (species) [taxon 498019], Candida [taxon 1535326], Pichia kudriavzevii (species) [taxon 4909], Saccharomyces cerevisiae (baker's yeast, species) [taxon 4932]
- **Mutations:** F211I, F635C, S639F, S639, Y132, K143R, G71fs, S639Y, Y132F, F126, N866del, F862_N866del, W691, N647T, A657V, S639P, M690, F126V, R1354Y, F444L, K143, M690I, Ser29Leu, I466M, R1354H, F635Y, W691L, D642Y, A640V, V125A, F635L, R1354S, Y501H, F126L, R1354, M690V

## Full text

_Full body text omitted from this summary view._ Fetch the complete paper as Markdown: https://tomesphere.com/paper/PMC13041361/full.md

## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC13041361/full.md

## References

182 references — full list in the complete paper: https://tomesphere.com/paper/PMC13041361/full.md

---
Source: https://tomesphere.com/paper/PMC13041361