# A genome-wide interaction study of thyroid-stimulating hormone levels and particulate matter exposure among Koreans

**Authors:** Young Jun Park, Hyun-Jin Kim, Ho-Young Son, Juhyun Kim, Jae Moon Yun, Hyuktae Kwon, Belong Cho, Jin-Ho Park, Jong-Il Kim

PMC · DOI: 10.1186/s41021-026-00357-z · Genes and Environment · 2026-03-05

## TL;DR

This study explores how genetic factors interact with air pollution to affect thyroid function in Koreans.

## Contribution

This is the first genome-wide interaction study linking air pollution exposure to thyroid function in Koreans.

## Key findings

- One SNP near MSRA reached a suggestive level of significance in interaction with PM10 exposure.
- Two genetic loci (FAM84B/PCAT1 and STARD13) were replicated across cohorts.
- A genetic variant between CGNL1 and GCOM1 showed functional relevance.

## Abstract

Although the associations between air pollution exposure and thyroid function have been reported, the interactive effects of the genes involved remain unknown. Therefore, we aimed to identify candidate genetic loci involved in thyroid function by interacting with annual average exposure to particulate matter with a diameter of 10 microns or smaller (PM10) in Korean adults. A total of 1,863 and 1,458 adults were included in the discovery and replication steps, respectively. The average annual concentration of PM10 exposure was considered, and the participants were classified into two groups (low-to-moderate exposure and high-exposure groups) for binary analyses. A genome-wide single-nucleotide polymorphism analysis using a PM10 exposure interaction study was performed to determine thyroid-stimulating hormone levels in Korean adults.

Although no SNPs surpassed the stringent genome-wide significance threshold of Pint < 5E-08, one SNP (rs11781213) near MSRA reached a suggestive level of significance of Pint < 5E-07. Two genetic susceptibility loci (FAM84B/PCAT1 and STARD13) were replicated at a nominal significance level of Pint < 1E-05 for the discovery cohort, and Pint < 0.05 for the replication cohort. A genetic variant (rs7169081 G > A) between CGNL1 and GCOM1 was of functional interest.

This is the first study reporting genome-wide-air pollution interaction results for thyroid function. The association between long-term PM10 exposure and thyroid hormone levels may be partly explained by identifying several suggestive loci, including MSRA, PCAT1, and GCOM1.

The online version contains supplementary material available at 10.1186/s41021-026-00357-z.

## Linked entities

- **Genes:** MSRA (methionine sulfoxide reductase A) [NCBI Gene 4482], LRATD2 (LRAT domain containing 2) [NCBI Gene 157638], PCAT1 (prostate cancer associated transcript 1) [NCBI Gene 100750225], STARD13 (StAR related lipid transfer domain containing 13) [NCBI Gene 90627], CGNL1 (cingulin like 1) [NCBI Gene 84952], GCOM1 (GCOM1, MYZAP-POLR2M combined locus) [NCBI Gene 145781]

## Full-text entities

- **Genes:** GSTP1 (glutathione S-transferase pi 1) [NCBI Gene 2950] {aka DFN7, FAEES3, GST3, GSTP, GSTP1-1, HEL-S-22}, MSRA (methionine sulfoxide reductase A) [NCBI Gene 4482] {aka PMSR}, IGKV7-3 (immunoglobulin kappa variable 7-3 (pseudogene)) [NCBI Gene 28905] {aka B1, IGKV73}, LINC03022 (long intergenic non-protein coding RNA 3022) [NCBI Gene 101929191] {aka LINCR-0001}, ABCB6 (ATP binding cassette subfamily B member 6 (LAN blood group)) [NCBI Gene 10058] {aka ABC, LAN, MTABC3, PRP, umat}, STARD13 (StAR related lipid transfer domain containing 13) [NCBI Gene 90627] {aka ARHGAP37, DLC2, GT650, LINC00464}, Msra (methionine sulfoxide reductase A) [NCBI Gene 29447], Tnf (tumor necrosis factor) [NCBI Gene 21926] {aka DIF, TNF-a, TNF-alpha, TNFSF2, TNFalpha, Tnfa}, GSTM1 (glutathione S-transferase mu 1) [NCBI Gene 2944] {aka GST1, GSTM1-1, GSTM1a-1a, GSTM1b-1b, GTH4, GTM1}, MYH7 (myosin heavy chain 7) [NCBI Gene 4625] {aka CMD1S, CMH1, CMYO7A, CMYO7B, CMYP7A, CMYP7B}, Il1b (interleukin 1 beta) [NCBI Gene 16176] {aka IL-1beta, Il-1b}, PCAT1 (prostate cancer associated transcript 1) [NCBI Gene 100750225] {aka PCA1, PCAT-1, PiHL}, PCAP (predisposing for prostate cancer) [NCBI Gene 7834] {aka HPC2, HPC8}, Msra (methionine sulfoxide reductase A) [NCBI Gene 110265] {aka 2310045J23Rik, 6530413P12Rik, MSR-A}, SGCG (sarcoglycan gamma) [NCBI Gene 6445] {aka 35DAG, A4, DAGA4, DMDA, DMDA1, LGMD2C}, GOT2 (glutamic-oxaloacetic transaminase 2) [NCBI Gene 2806] {aka DEE82, KAT4, KATIV, KYAT4, mitAAT}, PRAG1 (PEAK1 related, kinase-activating pseudokinase 1) [NCBI Gene 157285] {aka NACK, PEAK2, PRAGMIN, SGK223}, IGFBP5 (insulin like growth factor binding protein 5) [NCBI Gene 3488] {aka IBP5}, B4GALNT3 (beta-1,4-N-acetyl-galactosaminyltransferase 3) [NCBI Gene 283358], IGKV5-2 (immunoglobulin kappa variable 5-2) [NCBI Gene 28907] {aka B2, IGKV52}, CGNL1 (cingulin like 1) [NCBI Gene 84952] {aka JACOP, PCING}, GSTT1 (glutathione S-transferase theta 1) [NCBI Gene 2952], MYH6 (myosin heavy chain 6) [NCBI Gene 4624] {aka ASD3, CMD1EE, CMH14, MYHC, MYHCA, SSS3}, GCOM1 (GCOM1, MYZAP-POLR2M combined locus) [NCBI Gene 145781] {aka GRINL1A, Gcom2, MYZAP-POLR2M, gcom}, LRATD2 (LRAT domain containing 2) [NCBI Gene 157638] {aka BCMP101, FAM84B, NSE2}, STX1A (syntaxin 1A) [NCBI Gene 6804] {aka HPC-1, P35-1, STX1, SYN1A}, VAV3 (vav guanine nucleotide exchange factor 3) [NCBI Gene 10451], MKI67 (marker of proliferation Ki-67) [NCBI Gene 4288] {aka KIA, MIB-, MIB-1, PPP1R105}
- **Diseases:** chronic obstructive pulmonary disease (MESH:D029424), thyroid hormone dysregulation (MESH:D018382), hyperthyroidism (MESH:D006980), dilated cardiomyopathy (MESH:D002311), abdominal obesity (MESH:D056128), neurological and psychiatric disorders (MESH:D001523), thyroid carcinogenesis (MESH:D063646), hypothyroidism (MESH:D007037), deaths (MESH:D003643), obese (MESH:D009765), stroke (MESH:D020521), visceral adiposity (MESH:D007418), inflammation (MESH:D007249), breast cancer (MESH:D001943), asthma (MESH:D001249), papillary thyroid carcinoma (MESH:D000077273), overweight (MESH:D050177), Cancer (MESH:D009369), thyroid autoimmunity (MESH:D013967), thyroid cancer (MESH:D013964), thyroid dysfunction (MESH:D013959)
- **Chemicals:** K+ (MESH:D011188), lipid (MESH:D008055), iron (MESH:D007501), methionine (MESH:D008715), Ca2+ (-), cholesterol (MESH:D002784), TSH (MESH:D013972), PM (MESH:D011399), Na+ (MESH:D012964), reactive oxygen species (MESH:D017382), methionine sulfoxide (MESH:C013111), Triiodothyronine (MESH:D014284)
- **Species:** Homo sapiens (human, species) [taxon 9606], Mus musculus (house mouse, species) [taxon 10090], Rattus norvegicus (brown rat, species) [taxon 10116]
- **Mutations:** rs79013868, rs9597585, rs78499451, rs879526736, rs6998646, rs7837316, G > A, rs10109092, rs11781213, rs73563822, rs9510483

## Full text

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## Figures

5 figures with captions in the complete paper: https://tomesphere.com/paper/PMC13041225/full.md

## References

2 references — full list in the complete paper: https://tomesphere.com/paper/PMC13041225/full.md

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Source: https://tomesphere.com/paper/PMC13041225