# Acral Mesenchymal Spindle Cell Neoplasm With a Novel HMGA2::NCOA2 Fusion

**Authors:** Grace Z. Armstrong, Carina A. Dehner, Eitan Halper‐Stromberg, Esther Baranov, Anna C. Eden, Rachel P. Kowal

PMC · DOI: 10.1111/cup.70041 · Journal of Cutaneous Pathology · 2025-12-29

## TL;DR

This paper reports the first case of a rare skin tumor in a young woman with a new genetic fusion, HMGA2::NCOA2, highlighting the importance of genomic testing in diagnosing unusual tumors.

## Contribution

The paper presents the first documented case of an HMGA2::NCOA2 fusion in an acral mesenchymal tumor.

## Key findings

- The tumor had a novel HMGA2::NCOA2 fusion identified through next-generation sequencing.
- The tumor showed benign features but was surgically removed due to the fusion's unpredictable behavior.
- The case underscores the need for further research and clinical follow-up on this genetic fusion.

## Abstract

Molecular profiling has revolutionized the field of soft tissue pathology, enhancing diagnostic precision and treatment strategies. The integration of molecular analysis and immunohistochemistry has been crucial for classifying diagnostically challenging acral mesenchymal neoplasms. Herein, we report the first documented case of an acral mesenchymal spindle cell neoplasm harboring an HMGA2::NCOA2 fusion. The neoplasm presented as a slow‐growing verrucous papule on the right thumb of an 18‐year‐old female. Histological examination revealed spindled cells of varying cellularity with intervening sclerotic collagen and dilated vasculature. The cells had patchy S100 and focal GLUT‐1 reactivity but were negative for CD34, EMA, Sox‐10, Pan‐TRK, p63, CKAE1/3, MUC4, ALK, Factor 13A, actin, desmin, and ERG. Given the unusual morphology and non‐diagnostic immunohistochemical profile, the specimen was sent for additional molecular profiling. Next‐generation sequencing revealed a novel in‐frame HMGA2::NCOA2 fusion. The tumor was likely benign, with 4 mitoses per 10 high‐powered fields (HPF), but was excised due to the unpredictable behavior of the fusion. As the first known case to date with this fusion, these findings contribute to the emerging research on genomic testing in acral soft tissue tumors. Additional cases and longer clinical follow‐up are needed to better characterize the novel HMGA2::NCOA2 fusion.

## Linked entities

- **Genes:** HMGA2 (high mobility group AT-hook 2) [NCBI Gene 8091], NCOA2 (nuclear receptor coactivator 2) [NCBI Gene 10499]
- **Proteins:** S100A1 (S100 calcium binding protein A1), SLC2A1 (solute carrier family 2 member 1), CD34 (CD34 molecule), ETFA (electron transfer flavoprotein subunit alpha), SOX10 (SRY-box transcription factor 10), RPE65 (retinoid isomerohydrolase RPE65), MUC4 (mucin 4, cell surface associated), ALK (ALK receptor tyrosine kinase), ACTIN (hypothetical protein), LOC101066771 (desmin-like), ERG (ETS transcription factor ERG)

## Full-text entities

- **Genes:** TP63 (tumor protein p63) [NCBI Gene 8626] {aka AIS, B(p51A), B(p51B), EEC3, KET, LMS}, ADA2 (adenosine deaminase 2) [NCBI Gene 51816] {aka ADGF, CECR1, IDGFL, PAN, SNEDS, VAIHS}, S100A1 (S100 calcium binding protein A1) [NCBI Gene 6271] {aka S100, S100-alpha, S100A}, ALK (ALK receptor tyrosine kinase) [NCBI Gene 238] {aka ALK1, CD246, NBLST3}, ERG (ETS transcription factor ERG) [NCBI Gene 2078] {aka LMPHM14, erg-3, p55}, NTRK1 (neurotrophic receptor tyrosine kinase 1) [NCBI Gene 4914] {aka MTC, TRK, TRK1, TRKA, Trk-A, p140-TrkA}, SOX10 (SRY-box transcription factor 10) [NCBI Gene 6663] {aka DOM, PCWH, SOX-10, WS2E, WS4, WS4C}, MUC1 (mucin 1, cell surface associated) [NCBI Gene 4582] {aka ADMCKD, ADMCKD1, ADTKD2, CA 15-3, CD227, Ca15-3}, MUC4 (mucin 4, cell surface associated) [NCBI Gene 4585] {aka ASGP, HSA276359, MUC-4}, CD34 (CD34 molecule) [NCBI Gene 947], DES (desmin) [NCBI Gene 1674] {aka CDCD3, CSM1, CSM2, LGMD1D, LGMD1E, LGMD2R}, SLC2A1 (solute carrier family 2 member 1) [NCBI Gene 6513] {aka CSE, DYT17, DYT18, DYT9, EIG12, GLUT}
- **Diseases:** verrucous papule (MESH:D018289), acral soft tissue tumors (MESH:D012983), acral mesenchymal neoplasms (MESH:C000721267), neoplasm (MESH:D009369), Acral Mesenchymal Spindle Cell Neoplasm (MESH:D002277)

## Full text

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## Figures

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## References

31 references — full list in the complete paper: https://tomesphere.com/paper/PMC13040434/full.md

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Source: https://tomesphere.com/paper/PMC13040434