# Molecular epidemiology and clinical differentiation between Clostridioides difficile infection and colonization across three chicago medical centers

**Authors:** Andrew M. Skinner, Do Young Kim, Adam Cheknis, Michael Lin, Mary K. Hayden, Nicholas M. Moore, Amanda Harrington, Vera Tesic, Kathleen G. Beavis, Dale N. Gerding, Larry K. Kociolek, Charlesnika T. Evans, Stuart Johnson

PMC · DOI: 10.1017/ash.2026.10306 · Antimicrobial Stewardship & Healthcare Epidemiology : ASHE · 2026-03-25

## TL;DR

This study examines how to distinguish Clostridioides difficile infection from colonization in patients at three Chicago medical centers.

## Contribution

The study identifies recent antibiotic use as a predictor of true infection and reports a shift in dominant C. difficile strain.

## Key findings

- 27.2% of patients with positive C. difficile tests were colonized, not infected.
- Recent antibiotic use was strongly associated with true infection (adjusted odds ratio: 4.38).
- REA group Y became the dominant C. difficile strain, replacing BI.

## Abstract

In a retrospective cohort study at three Chicago academic medical centers, 22/81 (27.2%) patients with a clinically adjudicated positive C. difficile test result were colonized. Recent antibiotic usage predicted true infection (adjusted odds ratio: 4.38 for infection). Restriction endonuclease analysis(REA) group Y (29.3%) replaced BI (9.3%) as the dominant strain.

## Linked entities

- **Species:** Clostridioides difficile (taxon 1496)

## Full-text entities

- **Diseases:** infection (MESH:D007239), Clostridioides difficile infection (MESH:D003015)
- **Species:** Clostridioides difficile (species) [taxon 1496], Homo sapiens (human, species) [taxon 9606]

## Full text

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## Figures

2 figures with captions in the complete paper: https://tomesphere.com/paper/PMC13040294/full.md

## References

10 references — full list in the complete paper: https://tomesphere.com/paper/PMC13040294/full.md

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Source: https://tomesphere.com/paper/PMC13040294