# Maintenance of intestinal CX3CR1+ macrophage homeostasis defines post-treatment control in SIV-infected macaques

**Authors:** Stéphane Hua, Keltouma Benmeziane, Delphine Desjardins, Nastasia Dimant, Marco Leonec, Laetitia Bossevot, Julien Lemaitre, Adeline Mélard, Francis Relouzat, Véronique Avettand-Fenoël, Nathalie Dereuddre-Bosquet, Asier Sáez-Cirión, Roger Le Grand, Mariangela Cavarelli

PMC · DOI: 10.1038/s41467-026-69848-5 · Nature Communications · 2026-02-24

## TL;DR

The study shows that preserving a specific type of intestinal macrophage in SIV-infected macaques is linked to long-term viral remission after treatment stops.

## Contribution

The study identifies CX3CR1+ intestinal macrophages as a potential biomarker for post-treatment control in SIV infection.

## Key findings

- PTC macaques maintain CX3CR1high macrophages and reduced immune activation compared to non-controllers.
- CX3CR1high macrophage abundance inversely correlates with viral burden and pro-inflammatory cytokines.
- Loss of CX3CR1high macrophages is associated with CD4+ T cell depletion and persistent viral infection.

## Abstract

Achieving durable viral remission without antiretroviral therapy (ART) remains a central challenge in HIV-1 cure research. Using a pathogenic SIV model in male cynomolgus macaques, we investigated mucosal and systemic immune features associated with post-treatment control (PTC). Chronic SIV infection disrupts intestinal macrophage homeostasis, skewing the compartment toward a CX3CR1low inflammatory phenotype marked by increased expression of costimulatory and homing markers. This polarization is associated with mucosal CD4+ T cell depletion, elevated neutrophil activation, and systemic cytokine induction. Non-controllers exhibit a similar inflammatory profile. In contrast, PTCs maintain CX3CR1high macrophages, preserve regulatory CD4 + T cells, and exhibit attenuated mucosal and systemic immune activation, resembling uninfected animals. CX3CR1high macrophage abundance inversely correlates with viral burden, T cell activation, and pro-inflammatory cytokines, suggesting a potential role in post-treatment control. These findings identify CX3CR1-expressing intestinal macrophages as a potential biomarker of mucosal immune regulation and highlight their relevance as targets in HIV cure strategies.

A better understanding of post-treatment control after therapy cessation can help design therapeutic strategies for people living with HIV. Here the authors show in a SIV macaque model that intestinal CX3CR1+ macrophages are preserved in SIV post-treatment controllers, while their loss is associated with increased CD4+ T cell activation and viral persistence, linking mucosal immune balance to long-term viral remission.

## Linked entities

- **Genes:** CX3CR1 (C-X3-C motif chemokine receptor 1) [NCBI Gene 1524]
- **Diseases:** SIV (MONDO:0700112)

## Full-text entities

- **Genes:** CX3CR1 (C-X3-C motif chemokine receptor 1) [NCBI Gene 1524] {aka CCRL1, CMKBRL1, CMKDR1, GPR13, GPRV28, V28}, CD4 (CD4 molecule) [NCBI Gene 920] {aka CD4mut, IMD79, Leu-3, OKT4D, T4}
- **Diseases:** inflammatory (MESH:D007249), SIV infection (OMIM:270100)
- **Species:** Human immunodeficiency virus 1 (no rank) [taxon 11676], Macaca (macaque, genus) [taxon 9539], Qubevirus faecium (species) [taxon 39804]

## Full text

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## Figures

9 figures with captions in the complete paper: https://tomesphere.com/paper/PMC13039934/full.md

## References

2 references — full list in the complete paper: https://tomesphere.com/paper/PMC13039934/full.md

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Source: https://tomesphere.com/paper/PMC13039934