# CXCR6+ T cells promote apoptosis and necroptosis in proximal tubules during AKI-to-CKD transition

**Authors:** Xiaoxu Li, Isabel Melchinger, Yuchu Chen, Jiankan Guo, Lloyd G. Cantley, Leyuan Xu

PMC · DOI: 10.1038/s41419-026-08644-x · Cell Death & Disease · 2026-03-24

## TL;DR

CXCR6+ T cells contribute to kidney damage after injury, and blocking their activity may help prevent chronic kidney disease.

## Contribution

Identifies CXCR6+ T cells as key drivers of tubular cell death during AKI-to-CKD transition and suggests targeting the CXCL16-CXCR6 axis as a potential therapeutic strategy.

## Key findings

- CXCR6+ T cells promote apoptosis and necroptosis in proximal tubules during AKI-to-CKD transition.
- Genetic deletion of Cxcr6 reduces T cell accumulation and tubular cell death, preserving kidney function.
- Macrophage-derived Cxcl16 is the dominant chemokine recruiting Cxcr6+ T cells to injured kidneys.

## Abstract

Acute kidney injury (AKI) can progress to chronic kidney disease (CKD) in the setting of maladaptive repair characterized by tubular atrophy, inflammation, and fibrosis. Programmed cell death is a key driver of proximal tubule (PT) loss, yet how immune infiltration promotes tubular injury and death remains incompletely understood. Using a mouse model of maladaptive repair, we integrated bulk and single-cell RNA sequencing with immunohistochemistry and protein analyses to define immune-epithelial interactions during AKI-to-CKD transition. Injured kidneys exhibited loss of healthy PTs, expansion of injured PT subsets, and late-stage T cell accumulation. Apoptotic and necroptotic signaling pathways were markedly upregulated, particularly in VCAM1+ PT cells. Cell-cell interaction analysis identified macrophage-derived Cxcl16 as the dominant chemokine mediating recruitment of Cxcr6+ T cells. Genetic deletion of Cxcr6 reduced renal T cell accumulation, cytotoxic effector expression, and activation of apoptotic (cleaved caspase-3, Bax) and necroptotic signaling (MLKL, phospho-MLKL) in PT cells. Accordingly, Cxcr6−/− mice displayed preserved PT differentiation, reduced fibrosis, and improved renal function. Together, these findings identify Cxcr6+ T cells as key mediators of immune-driven tubular cell death during maladaptive repair and suggest that targeting the CXCL16-CXCR6 axis may mitigate tubular injury and slow AKI-to-CKD progression.

## Linked entities

- **Genes:** CXCR6 (C-X-C motif chemokine receptor 6) [NCBI Gene 10663], CXCL16 (C-X-C motif chemokine ligand 16) [NCBI Gene 58191], BAX (BCL2 associated X, apoptosis regulator) [NCBI Gene 581], MLKL (mixed lineage kinase domain like pseudokinase) [NCBI Gene 197259]
- **Proteins:** VCAM1 (vascular cell adhesion molecule 1)
- **Diseases:** acute kidney injury (MONDO:0002492), chronic kidney disease (MONDO:0005300)
- **Species:** Mus musculus (taxon 10090)

## Full-text entities

- **Genes:** Cd4 (CD4 antigen) [NCBI Gene 12504] {aka L3T4, Ly-4}, Ctla4 (cytotoxic T-lymphocyte-associated protein 4) [NCBI Gene 12477] {aka Cd152, Ctla-4, Ly-56}, Csf2 (colony stimulating factor 2 (granulocyte-macrophage)) [NCBI Gene 12981] {aka CSF, Csfgm, GMCSF, Gm-CSf, MGI-IGM}, Cxcl16 (C-X-C motif chemokine ligand 16) [NCBI Gene 66102] {aka 0910001K24Rik, CXCL16v1, CXCL16v2, SR-PSOX, Zmynd15, b2b498Clo}, Cxcr6 (C-X-C motif chemokine receptor 6) [NCBI Gene 80901] {aka BONZO, STRL33}, CXCL16 (C-X-C motif chemokine ligand 16) [NCBI Gene 58191] {aka CXCLG16, SR-PSOX, SRPSOX}, Ticam1 (TIR domain containing adaptor molecule 1) [NCBI Gene 106759] {aka TICAM-1, TRIF}, Adgre1 (adhesion G protein-coupled receptor E1) [NCBI Gene 13733] {aka DD7A5-7, EGF-TM7, Emr1, F4/80, Gpf480, Ly71}, Hsp86-ps2 (heat shock protein 86, pseudogene 2) [NCBI Gene 111042] {aka 86kDa, Hsp86-3, Hsp90}, Fasl (Fas ligand) [NCBI Gene 14103] {aka APT1LG1, CD178, CD95-L, CD95L, Fas-L, Faslg}, Mlkl (mixed lineage kinase domain-like) [NCBI Gene 74568] {aka 9130019I15Rik}, Myd88 (myeloid differentiation primary response gene 88) [NCBI Gene 17874], Sox9 (SRY (sex determining region Y)-box 9) [NCBI Gene 20682] {aka 2010306G03Rik, mKIAA4243, mSox9}, MLKL (mixed lineage kinase domain like pseudokinase) [NCBI Gene 197259] {aka hMLKL}, Cd3e (CD3 antigen, epsilon polypeptide) [NCBI Gene 12501] {aka CD3, CD3epsilon, T3e}, Ikbkb (inhibitor of kappaB kinase beta) [NCBI Gene 16150] {aka IKK-2, IKK-B, IKK-beta, IKK2, IKK[b], IKKbeta}, Bax (BCL2-associated X protein) [NCBI Gene 12028], Ifng (interferon gamma) [NCBI Gene 15978] {aka IFN-g, If2f, Ifg}, Il2ra (interleukin 2 receptor, alpha chain) [NCBI Gene 16184] {aka CD25, Il2r, Ly-43}, Ripk3 (receptor-interacting serine-threonine kinase 3) [NCBI Gene 56532] {aka 2610528K09Rik, Rip3}, Il1r1 (interleukin 1 receptor, type I) [NCBI Gene 16177] {aka CD121a, CD121b, IL-1R-1, IL-1R-alpha, IL-1R1, IL-1RT-1}, Pdcd1 (programmed cell death 1) [NCBI Gene 18566] {aka Ly101, PD-1, Pdc1}, Myc (Myc proto-oncogene, bHLH transcription factor) [NCBI Gene 17869] {aka Myc2, Niard, Nird, bHLHe39}, Ccr2 (C-C motif chemokine receptor 2) [NCBI Gene 12772] {aka Cc-ckr-2, Ccr2a, Ccr2b, Ckr2, Ckr2a, Ckr2b}, Hprt1 (hypoxanthine phosphoribosyltransferase 1) [NCBI Gene 15452] {aka HPGRT, Hprt}, CASP3 (caspase 3) [NCBI Gene 836] {aka CPP32, CPP32B, SCA-1}, Ccl6 (C-C motif chemokine ligand 6) [NCBI Gene 20305] {aka MRP-1, Scya6, c10}, Tnfrsf1b (tumor necrosis factor receptor superfamily, member 1b) [NCBI Gene 21938] {aka CD120b, TNF-R-II, TNF-R2, TNF-R75, TNF-alphaR2, TNFBR}, Gzmb (granzyme B) [NCBI Gene 14939] {aka CCP-1/C11, CCP1, Ctla-1, Ctla1, GZB}, HAVCR1 (hepatitis A virus cellular receptor 1) [NCBI Gene 26762] {aka CD365, HAVCR, HAVCR-1, KIM-1, KIM1, TIM}, Foxp3 (forkhead box P3) [NCBI Gene 20371] {aka JM2, scurfin, sf}, Il1b (interleukin 1 beta) [NCBI Gene 16176] {aka IL-1beta, Il-1b}, CXCR6 (C-X-C motif chemokine receptor 6) [NCBI Gene 10663] {aka BONZO, CD186, CDw186, STRL33, TYMSTR}, Tnf (tumor necrosis factor) [NCBI Gene 21926] {aka DIF, TNF-a, TNF-alpha, TNFSF2, TNFalpha, Tnfa}, Trp53 (transformation related protein 53) [NCBI Gene 22059] {aka Tp53, bbl, bfy, bhy, p44, p53}, Chuk (conserved helix-loop-helix ubiquitous kinase) [NCBI Gene 12675] {aka Chuk1, Fbx24, Fbxo24, IKBKA, IKK alpha, IKK1}, Cd8a (CD8 subunit alpha) [NCBI Gene 12525] {aka Ly-2, Ly-35, Ly-B, Lyt-2}, Ccl2 (C-C motif chemokine ligand 2) [NCBI Gene 20296] {aka HC11, JE, MCAF, MCP-1, MCP1, SMC-CF}, Havcr1 (hepatitis A virus cellular receptor 1) [NCBI Gene 171283] {aka KIM-1, TIM-1, Tim1, Timd1}, Il17a (interleukin 17A) [NCBI Gene 16171] {aka Ctla-8, Ctla8, IL-17, IL-17A, Il17}, Casp3 (caspase 3) [NCBI Gene 12367] {aka A830040C14Rik, AC-3, CASP-3, CC3, CPP-32, CPP32}, Csf1 (colony stimulating factor 1 (macrophage)) [NCBI Gene 12977] {aka BAP025, Csfm, MCSF, Mhdabap25, PG-M-CSF, op}, Dnase1 (deoxyribonuclease I) [NCBI Gene 13419] {aka DNaseI, Dnl1}, VCAM1 (vascular cell adhesion molecule 1) [NCBI Gene 7412] {aka CD106, INCAM-100}, Nfkb1 (nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105) [NCBI Gene 18033] {aka NF-KB1, NF-kappaB, NF-kappaB1, p105, p50, p50/p105}, Vcam1 (vascular cell adhesion molecule 1) [NCBI Gene 22329] {aka CD106, Vcam-1}
- **Diseases:** dehydration (MESH:D003681), PT (MESH:D007673), ischemic (MESH:D002545), AKI (MESH:D058186), interstitial (MESH:D065167), fibrosis (MESH:D005355), chronic (MESH:D002908), hypertension (MESH:D006973), inflammation (MESH:D007249), CKD (MESH:D051436), PT injury (MESH:D014947), bleeding (MESH:D006470), UUO (MESH:D014516), tubular damage (MESH:D000230), MPT (MESH:D004482), impaired renal function (MESH:D007674), atrophy (MESH:D001284), postoperative pain (MESH:D010149), T (MESH:D001260), cytotoxicity (MESH:D064420), deficient kidneys (MESH:D007680), mitochondrial injury (MESH:D028361), IRI (MESH:D015427), ischemia (MESH:D007511)
- **Chemicals:** xylazine (MESH:D014991), paraffin (MESH:D010232), phosphate (MESH:D010710), creatinine (MESH:D003404), formalin (MESH:D005557), PBS (MESH:D007854), picric acid (MESH:C005858), aminoglycosides (MESH:D000617), TBS (MESH:D013725), penicillin (MESH:D010406), H&amp;E (MESH:D006371), H2O2 (MESH:D006861), Tween-20 (MESH:D011136), hematoxylin (MESH:D006416), buprenorphine (MESH:D002047), saline (MESH:D012965), fluorescein (MESH:D019793), polyacrylamide (MESH:C016679), RLT (-), PolyA (MESH:D011061), streptomycin (MESH:D013307), PVDF (MESH:C024865), VX-765 (MESH:C520022), glutamine (MESH:D005973), U (MESH:D014501), DAB (MESH:C000469), DAPI (MESH:C007293), eosin (MESH:D004801), SDS (MESH:D012967), MgCl2 (MESH:D015636), Picrosirius red (MESH:C009798), cisplatin (MESH:D002945), EDTA (MESH:D004492)
- **Species:** Mus musculus (house mouse, species) [taxon 10090], Homo sapiens (human, species) [taxon 9606]
- **Cell lines:** C57BL/6J — Mus musculus (Mouse), Transformed cell line (CVCL_C0MW), MPT — Mus musculus (Mouse), Spontaneously immortalized cell line (CVCL_TZ65)

## Full text

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## Figures

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Source: https://tomesphere.com/paper/PMC13039913